Non-Coding RNA Search

Pig1-126L02

Sequence:


               
               AATCCTGCCTGGCGAGATCTCCCCATTGGTTGTTTACCCCGGAGAAATCTACATGTTTAA
GGGGGATGGTGCATCCATAATCAGTCTGTCCCTATAGGTCTGGGTCTTGGCGACCTTTTT
GTGACCTCTCCCGCCGGAGGAGGCTGCTGTCACTTTAAAAATTTACTGAAGAGGATCTTT
CTGGGCGGCGGGAGATAGCTCCCTTTCTCCCTCGCCCCGGGTTCTTTCTGGATGGCCGAG
CAGATCCTCTTTAAAGAGACAGTTCATGAAATAGAAACCCGGCGGCAGAGCTAGGAGTTG
CGAAAGGGGACGATCCCGTGAGGGCTAGGACCGGGGAAGGCGCAGCGGAGGATCAGAAAG
GGGGCTAGAGCTTCCCTCGCCTTCCCAGGCCCCCCACCTTTTCAAACTCTCCTCCTCCTG
CCTGTATCTCCCCCTCAACTCCCCTTGGAACTGGGAGAGAGAAGTGGAAGAAGTTTTAGT
GGGTTTCAGATAACTTTCATTACACATCGTGCTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCTGCCTGGCGAGATCTCCCCATTGGTTGTTTACCCCGGAGAAATCTACATGTTTAA
GGGGGATGGTGCATCCATAATCAGTCTGTCCCTATAGGTCTGGGTCTTGGCGACCTTTTT
GTGACCTCTCCCGCCGGAGGAGGCTGCTGTCACTTTAAAAATTTACTGAAGAGGATCTTT
CTGGGCGGCGGGAGATAGCTCCCTTTCTCCCTCGCCCCGGGTTCTTTCTGGATGGCCGAG
CAGATCCTCTTTAAAGAGACAGTTCATGAAATAGAAACCCGGCGGCAGAGCTAGGAGTTG
CGAAAGGGGACGATCCCGTGAGGGCTAGGACCGGGGAAGGCGCAGCGGAGGATCAGAAAG
GGGGCTAGAGCTTCCCTCGCCTTCCCAGGCCCCCCACCTTTTCAAACTCTCCTCCTCCTG
CCTGTATCTCCCCCTCAACTCCCCTTGGAACTGGGAGAGAGAAGTGGAAGAAGTTTTAGT
GGGTTTCAGATAACTTTCATTACACATCGTGCTGAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               119-257, - strand, RNAz p=0.99365
               

               
               337-493, - strand, RNAz p=0.991673

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-257, - strand, RNAz p=0.99365
               

               
               337-493, - strand, RNAz p=0.991673

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               325-459, - strand, RNAmicro p=0.959259

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               325-459, - strand, RNAmicro p=0.959259

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               180-165, DA188910 BRAMY3 Homo sapiens cDNA clone BRAMY3010424 5', mRNA 
(dbj|DA188910.1|), blast E-value=0.00000000000004, identity=97.87% 
               

               
               180-165, DA851296 PLACE7 Homo sapiens cDNA clone PLACE7000967 5', mRNA 
(dbj|DA851296.1|), blast E-value=0.00000000000004, identity=97.87% 
               

               
               180-257, DA859344 PLACE7 Homo sapiens cDNA clone PLACE7011294 5', mRNA 
(dbj|DA859344.1|), blast E-value=5e-35, identity=100% 
               

               
               180-257, DKFZp686F12114_r1 686 (synonym (emb|BX470726.1|), blast E-value=5e-35, 
identity=100% 
               

               
               180-165, DKFZp781M1513_r1 781 (synonym (emb|BX491952.1|), blast 
E-value=0.0000000000006, identity=97.78% 
               

               
               180-257, DKFZp781M1216_r1 781 (synonym (emb|BX642837.1|), blast E-value=5e-35, 
identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               180-165, DA188910 BRAMY3 Homo sapiens cDNA clone BRAMY3010424 5', mRNA 
(dbj|DA188910.1|), blast E-value=0.00000000000004, identity=97.87% 
               

               
               180-165, DA851296 PLACE7 Homo sapiens cDNA clone PLACE7000967 5', mRNA 
(dbj|DA851296.1|), blast E-value=0.00000000000004, identity=97.87% 
               

               
               180-257, DA859344 PLACE7 Homo sapiens cDNA clone PLACE7011294 5', mRNA 
(dbj|DA859344.1|), blast E-value=5e-35, identity=100% 
               

               
               180-257, DKFZp686F12114_r1 686 (synonym (emb|BX470726.1|), blast E-value=5e-35, 
identity=100% 
               

               
               180-165, DKFZp781M1513_r1 781 (synonym (emb|BX491952.1|), blast 
E-value=0.0000000000006, identity=97.78% 
               

               
               180-257, DKFZp781M1216_r1 781 (synonym (emb|BX642837.1|), blast E-value=5e-35, 
identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr1 (63948286-63948823)
               

               
               1-516, gnl|Hg17|chr3 (170348153-170347630)
               

               
               1-516, gnl|Mm7|chr3 (29815920-29815419)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr1 (63948286-63948823)
               

               
               1-516, gnl|Hg17|chr3 (170348153-170347630)
               

               
               1-516, gnl|Mm7|chr3 (29815920-29815419)

	119-257, - strand, RNAz p=0.99365
	337-493, - strand, RNAz p=0.991673

	180-165, DA188910 BRAMY3 Homo sapiens cDNA clone BRAMY3010424 5', mRNA (dbj\|DA188910.1\|), blast E-value=0.00000000000004, identity=97.87%
	180-165, DA851296 PLACE7 Homo sapiens cDNA clone PLACE7000967 5', mRNA (dbj\|DA851296.1\|), blast E-value=0.00000000000004, identity=97.87%
	180-257, DA859344 PLACE7 Homo sapiens cDNA clone PLACE7011294 5', mRNA (dbj\|DA859344.1\|), blast E-value=5e-35, identity=100%
	180-257, DKFZp686F12114_r1 686 (synonym (emb\|BX470726.1\|), blast E-value=5e-35, identity=100%
	180-165, DKFZp781M1513_r1 781 (synonym (emb\|BX491952.1\|), blast E-value=0.0000000000006, identity=97.78%
	180-257, DKFZp781M1216_r1 781 (synonym (emb\|BX642837.1\|), blast E-value=5e-35, identity=100%

	1-516, gnl\|bosTau2\|chr1 (63948286-63948823)
	1-516, gnl\|Hg17\|chr3 (170348153-170347630)
	1-516, gnl\|Mm7\|chr3 (29815920-29815419)