Non-Coding RNA Search

Pig1-127M04

Sequence:


               
               TGAAAAACCAGCCAGTAGGCACTCTTGTCACTACCATAACAGGCTCCTCCTTGAGAGGAG
AACCTTTGTCCTATTATATTGCCAGTGGGAATCTTGGCAACACATTCCAGATTGATCAGT
TAACAGGACAGGTGTCCATTAGTCAGGCTCTGGATTTTGAAAAGATACAAAAATATGTTG
TATGGATAGAAGCCAGAGATGGAGGTTTCCCTCCTTTCTCTGCTTATGAGAAACTGGATA
TAACCGTATTAGATGTCAATGATAATTCCCCAGTTTTTAAGGAAGATCCGTTTGTATCTG
AAATATTGGAAAACCTTTCTCCTCGAAAAATACTTACTGTTTCTGCAGTGGACAAGGACA
GTGGACCCAATGGACAGTTAGATTATGAAATTGTTAATGGCAACAGAGAACATAGTTTCA
GTATCAACCATGCCACTGGTGAAATCAGAAGCATTCGACCTTTAGACAGGGAAAAAACAG
CTCAGTATGTGCTTACCATAAAGTCCTCAGACAAAGGCTCCCCTTCCCAGAGTGCCTCAG
TAAAAGTCATCATTAACATTTTAGATGAAAATGATAATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAAACCAGCCAGTAGGCACTCTTGTCACTACCATAACAGGCTCCTCCTTGAGAGGAG
AACCTTTGTCCTATTATATTGCCAGTGGGAATCTTGGCAACACATTCCAGATTGATCAGT
TAACAGGACAGGTGTCCATTAGTCAGGCTCTGGATTTTGAAAAGATACAAAAATATGTTG
TATGGATAGAAGCCAGAGATGGAGGTTTCCCTCCTTTCTCTGCTTATGAGAAACTGGATA
TAACCGTATTAGATGTCAATGATAATTCCCCAGTTTTTAAGGAAGATCCGTTTGTATCTG
AAATATTGGAAAACCTTTCTCCTCGAAAAATACTTACTGTTTCTGCAGTGGACAAGGACA
GTGGACCCAATGGACAGTTAGATTATGAAATTGTTAATGGCAACAGAGAACATAGTTTCA
GTATCAACCATGCCACTGGTGAAATCAGAAGCATTCGACCTTTAGACAGGGAAAAAACAG
CTCAGTATGTGCTTACCATAAAGTCCTCAGACAAAGGCTCCCCTTCCCAGAGTGCCTCAG
TAAAAGTCATCATTAACATTTTAGATGAAAATGATAATGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6V0P3_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6V0P3_CHICK

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               43-322, - strand, RNAz p=0.91103
               

               
               119-317, - strand, RNAz p=0.848334

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-322, - strand, RNAz p=0.91103
               

               
               119-317, - strand, RNAz p=0.848334

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               4-582, gnl|bosTau2|chr20 (25490072-25489494)
               

               
               4-582, gnl|canFam2|chr19 (18203873-18203262)
               

               
               4-582, gnl|danRer3|chr23 (19503201-19502590)
               

               
               4-582, gnl|dasNov1|scaffold_43726 (3625-3013)
               

               
               4-582, gnl|echTel1|scaffold_240591 (2394-3001)
               

               
               4-582, gnl|fr1|chrUn (27825471-27824860)
               

               
               4-582, gnl|galGal2|chr4 (53075704-53075093)
               

               
               4-582, gnl|hg17|chr4 (126727467-126728078)
               

               
               4-582, gnl|Hg17|chr4 (126727509-126728087)
               

               
               4-582, gnl|loxAfr1|scaffold_194 (75583-74972)
               

               
               4-582, gnl|mm7|chr3 (38797077-38797688)
               

               
               4-582, gnl|Mm7|chr3 (38797119-38797697)
               

               
               4-582, gnl|monDom2|scaffold_32 (1556985-1556374)
               

               
               4-582, gnl|oryCun1|scaffold_200176 (118289-118902)
               

               
               4-582, gnl|panTro1|chr3 (143582330-143582941)
               

               
               4-582, gnl|rheMac2|chr5 (117790734-117791345)
               

               
               4-582, gnl|rn3|chr2 (125890753-125891364)
               

               
               4-582, gnl|tetNig1|chr20 (2667105-2667716)
               

               
               4-582, gnl|xenTro1|scaffold_426 (1040385-1039774)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-582, gnl|bosTau2|chr20 (25490072-25489494)
               

               
               4-582, gnl|canFam2|chr19 (18203873-18203262)
               

               
               4-582, gnl|danRer3|chr23 (19503201-19502590)
               

               
               4-582, gnl|dasNov1|scaffold_43726 (3625-3013)
               

               
               4-582, gnl|echTel1|scaffold_240591 (2394-3001)
               

               
               4-582, gnl|fr1|chrUn (27825471-27824860)
               

               
               4-582, gnl|galGal2|chr4 (53075704-53075093)
               

               
               4-582, gnl|hg17|chr4 (126727467-126728078)
               

               
               4-582, gnl|Hg17|chr4 (126727509-126728087)
               

               
               4-582, gnl|loxAfr1|scaffold_194 (75583-74972)
               

               
               4-582, gnl|mm7|chr3 (38797077-38797688)
               

               
               4-582, gnl|Mm7|chr3 (38797119-38797697)
               

               
               4-582, gnl|monDom2|scaffold_32 (1556985-1556374)
               

               
               4-582, gnl|oryCun1|scaffold_200176 (118289-118902)
               

               
               4-582, gnl|panTro1|chr3 (143582330-143582941)
               

               
               4-582, gnl|rheMac2|chr5 (117790734-117791345)
               

               
               4-582, gnl|rn3|chr2 (125890753-125891364)
               

               
               4-582, gnl|tetNig1|chr20 (2667105-2667716)
               

               
               4-582, gnl|xenTro1|scaffold_426 (1040385-1039774)

	43-322, - strand, RNAz p=0.91103
	119-317, - strand, RNAz p=0.848334

	4-582, gnl\|bosTau2\|chr20 (25490072-25489494)
	4-582, gnl\|canFam2\|chr19 (18203873-18203262)
	4-582, gnl\|danRer3\|chr23 (19503201-19502590)
	4-582, gnl\|dasNov1\|scaffold_43726 (3625-3013)
	4-582, gnl\|echTel1\|scaffold_240591 (2394-3001)
	4-582, gnl\|fr1\|chrUn (27825471-27824860)
	4-582, gnl\|galGal2\|chr4 (53075704-53075093)
	4-582, gnl\|hg17\|chr4 (126727467-126728078)
	4-582, gnl\|Hg17\|chr4 (126727509-126728087)
	4-582, gnl\|loxAfr1\|scaffold_194 (75583-74972)
	4-582, gnl\|mm7\|chr3 (38797077-38797688)
	4-582, gnl\|Mm7\|chr3 (38797119-38797697)
	4-582, gnl\|monDom2\|scaffold_32 (1556985-1556374)
	4-582, gnl\|oryCun1\|scaffold_200176 (118289-118902)
	4-582, gnl\|panTro1\|chr3 (143582330-143582941)
	4-582, gnl\|rheMac2\|chr5 (117790734-117791345)
	4-582, gnl\|rn3\|chr2 (125890753-125891364)
	4-582, gnl\|tetNig1\|chr20 (2667105-2667716)
	4-582, gnl\|xenTro1\|scaffold_426 (1040385-1039774)