Non-Coding RNA Search

Pig1-129B06

Sequence:


               
               TGATGGAGGTTCACAAGTATCCCCTGTAGCCACCCCCACATAAACTTGAGACTTCCACCC
TTTTTTAAAGAGTGGTGGACAAAAAGAACATAATCGAGGCTACTCACATGTACGACAACG
CTGCGGAGGCCTGCAGCACCACAGAAGAGGTGTTTAACTCCCCTCGGGCTGGCTCTCCAC
TCTGCAACTCAAACCTGCAGGATTCGGAAGAAGTAGCGAGCCGCCTTCTTACAGCCTGTT
TCGAGAAGACACATCACTCCCCTCTCTCTCCAAAGACCATTCTAAGCTCTCCATGGAACT
GGAGGGAAATGATGGGCTGTCTTTCTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGGAGGTTCACAAGTATCCCCTGTAGCCACCCCCACATAAACTTGAGACTTCCACCC
TTTTTTAAAGAGTGGTGGACAAAAAGAACATAATCGAGGCTACTCACATGTACGACAACG
CTGCGGAGGCCTGCAGCACCACAGAAGAGGTGTTTAACTCCCCTCGGGCTGGCTCTCCAC
TCTGCAACTCAAACCTGCAGGATTCGGAAGAAGTAGCGAGCCGCCTTCTTACAGCCTGTT
TCGAGAAGACACATCACTCCCCTCTCTCTCCAAAGACCATTCTAAGCTCTCCATGGAACT
GGAGGGAAATGATGGGCTGTCTTTCTTCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               157-329, - strand, RNAz p=0.924462
               

               
               212-329, - strand, RNAz p=0.60832

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-329, - strand, RNAz p=0.924462
               

               
               212-329, - strand, RNAz p=0.60832

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               252-329, + strand, RNAmicro p=0.999889

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               252-329, + strand, RNAmicro p=0.999889

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-329, gnl|bosTau2|chr18 (46574442-46574776)
               

               
               1-329, gnl|canFam2|chr1 (111917167-111916764)
               

               
               1-329, gnl|danRer3|chr5 (39380001-39380416)
               

               
               1-329, gnl|dasNov1|scaffold_11548 (40623-41026)
               

               
               1-329, gnl|echTel1|scaffold_293914 (6972-6569)
               

               
               1-329, gnl|fr1|chrUn (87185050-87184641)
               

               
               1-329, gnl|galGal2|chrUn (102123648-102123248)
               

               
               1-329, gnl|hg17|chr19 (52116334-52116737)
               

               
               1-329, gnl|Hg17|chr19 (52116517-52116848)
               

               
               1-329, gnl|loxAfr1|scaffold_12200 (6695-7095)
               

               
               1-329, gnl|mm7|chr7 (14324623-14324220)
               

               
               1-329, gnl|Mm7|chr7 (14324438-14324104)
               

               
               1-329, gnl|monDom2|scaffold_149 (1689576-1689173)
               

               
               1-329, gnl|oryCun1|scaffold_203624 (45255-44852)
               

               
               1-329, gnl|panTro1|chr20 (49425580-49425983)
               

               
               1-329, gnl|rheMac2|chr19 (53246279-53246682)
               

               
               1-329, gnl|rn3|chr1 (76899707-76899304)
               

               
               1-329, gnl|tetNig1|chr16 (1464145-1463736)
               

               
               1-329, gnl|xenTro1|scaffold_105 (1388841-1389241)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-329, gnl|bosTau2|chr18 (46574442-46574776)
               

               
               1-329, gnl|canFam2|chr1 (111917167-111916764)
               

               
               1-329, gnl|danRer3|chr5 (39380001-39380416)
               

               
               1-329, gnl|dasNov1|scaffold_11548 (40623-41026)
               

               
               1-329, gnl|echTel1|scaffold_293914 (6972-6569)
               

               
               1-329, gnl|fr1|chrUn (87185050-87184641)
               

               
               1-329, gnl|galGal2|chrUn (102123648-102123248)
               

               
               1-329, gnl|hg17|chr19 (52116334-52116737)
               

               
               1-329, gnl|Hg17|chr19 (52116517-52116848)
               

               
               1-329, gnl|loxAfr1|scaffold_12200 (6695-7095)
               

               
               1-329, gnl|mm7|chr7 (14324623-14324220)
               

               
               1-329, gnl|Mm7|chr7 (14324438-14324104)
               

               
               1-329, gnl|monDom2|scaffold_149 (1689576-1689173)
               

               
               1-329, gnl|oryCun1|scaffold_203624 (45255-44852)
               

               
               1-329, gnl|panTro1|chr20 (49425580-49425983)
               

               
               1-329, gnl|rheMac2|chr19 (53246279-53246682)
               

               
               1-329, gnl|rn3|chr1 (76899707-76899304)
               

               
               1-329, gnl|tetNig1|chr16 (1464145-1463736)
               

               
               1-329, gnl|xenTro1|scaffold_105 (1388841-1389241)

	157-329, - strand, RNAz p=0.924462
	212-329, - strand, RNAz p=0.60832

	1-329, gnl\|bosTau2\|chr18 (46574442-46574776)
	1-329, gnl\|canFam2\|chr1 (111917167-111916764)
	1-329, gnl\|danRer3\|chr5 (39380001-39380416)
	1-329, gnl\|dasNov1\|scaffold_11548 (40623-41026)
	1-329, gnl\|echTel1\|scaffold_293914 (6972-6569)
	1-329, gnl\|fr1\|chrUn (87185050-87184641)
	1-329, gnl\|galGal2\|chrUn (102123648-102123248)
	1-329, gnl\|hg17\|chr19 (52116334-52116737)
	1-329, gnl\|Hg17\|chr19 (52116517-52116848)
	1-329, gnl\|loxAfr1\|scaffold_12200 (6695-7095)
	1-329, gnl\|mm7\|chr7 (14324623-14324220)
	1-329, gnl\|Mm7\|chr7 (14324438-14324104)
	1-329, gnl\|monDom2\|scaffold_149 (1689576-1689173)
	1-329, gnl\|oryCun1\|scaffold_203624 (45255-44852)
	1-329, gnl\|panTro1\|chr20 (49425580-49425983)
	1-329, gnl\|rheMac2\|chr19 (53246279-53246682)
	1-329, gnl\|rn3\|chr1 (76899707-76899304)
	1-329, gnl\|tetNig1\|chr16 (1464145-1463736)
	1-329, gnl\|xenTro1\|scaffold_105 (1388841-1389241)