Non-Coding RNA Search

Pig1-129B10

Sequence:


               
               GCCACGGGCAGGCGTGGGACCAAGACTGCCAGGCATGGCTCCGAGGAGACCCGGCCACAG
TCCTGCTTGGTGGGCTCAGCCGCAGGCAGGCCGGGTGGGGAGGGCAGCCCCAGCCCTAAG
ACCCAGGAGAGCAGCCTGAAGCGCAGGCTGTTCCGAAGCATGTTCCTGTCTGCCTCTGCC
ACCGCCCCTCCGAGCAGCAGCAGGCCAGGCCCTCCACCACAGAGCAAGCCCACCTCCTCT
TTCAGACCACCACAGAAAGAATGCCCCCCAAGCCTGGTGGCCAAGGCCCAGTCCTTGCCC
TCGGACCAACCTGTGGGAATCTTCAGCCCTCTGACCACCTCGGATACCAGCAGCCCCCAC
AAGTCCCTCCGAACAGCGCCAGCTGCCGGCCCTCCTCCAGGCCGGTCTTCCCCGGCAGGC
TCCCCCCGCACCCGGCATGCCCAGATCAGCACCAGCAACCTGTACCTGCCCCAGGACCCC
ACGGTGGCCAAGGGTGCCCTGGCTGGTGAGGACACGGGTGTTGTGACGCATGAGCAGTTC
AAGGCTGCACTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACGGGCAGGCGTGGGACCAAGACTGCCAGGCATGGCTCCGAGGAGACCCGGCCACAG
TCCTGCTTGGTGGGCTCAGCCGCAGGCAGGCCGGGTGGGGAGGGCAGCCCCAGCCCTAAG
ACCCAGGAGAGCAGCCTGAAGCGCAGGCTGTTCCGAAGCATGTTCCTGTCTGCCTCTGCC
ACCGCCCCTCCGAGCAGCAGCAGGCCAGGCCCTCCACCACAGAGCAAGCCCACCTCCTCT
TTCAGACCACCACAGAAAGAATGCCCCCCAAGCCTGGTGGCCAAGGCCCAGTCCTTGCCC
TCGGACCAACCTGTGGGAATCTTCAGCCCTCTGACCACCTCGGATACCAGCAGCCCCCAC
AAGTCCCTCCGAACAGCGCCAGCTGCCGGCCCTCCTCCAGGCCGGTCTTCCCCGGCAGGC
TCCCCCCGCACCCGGCATGCCCAGATCAGCACCAGCAACCTGTACCTGCCCCAGGACCCC
ACGGTGGCCAAGGGTGCCCTGGCTGGTGAGGACACGGGTGTTGTGACGCATGAGCAGTTC
AAGGCTGCACTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.650654

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.650654

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-228, gnl|bosTau2|chr10 (23656018-23656245)
               

               
               1-228, gnl|canFam2|chr30 (10440204-10440412)
               

               
               1-228, gnl|dasNov1|scaffold_2380 (9542-9750)
               

               
               1-228, gnl|galGal2|chr5 (2814996-2814813)
               

               
               1-228, gnl|hg17|chr15 (38345727-38345935)
               

               
               1-228, gnl|Hg17|chr15 (38345761-38345988)
               

               
               1-228, gnl|mm7|chr2 (118430978-118431186)
               

               
               1-228, gnl|Mm7|chr2 (118431012-118431239)
               

               
               1-228, gnl|monDom2|scaffold_12 (2226434-2226233)
               

               
               1-228, gnl|oryCun1|scaffold_134673 (3667-3462)
               

               
               1-228, gnl|panTro1|chr16 (38228466-38228674)
               

               
               1-228, gnl|rheMac2|chr7 (18600467-18600675)
               

               
               1-228, gnl|rn3|chr3 (105081828-105082036)
               

               
               1-228, gnl|xenTro1|scaffold_271 (26012-25817)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chr10 (23656018-23656245)
               

               
               1-228, gnl|canFam2|chr30 (10440204-10440412)
               

               
               1-228, gnl|dasNov1|scaffold_2380 (9542-9750)
               

               
               1-228, gnl|galGal2|chr5 (2814996-2814813)
               

               
               1-228, gnl|hg17|chr15 (38345727-38345935)
               

               
               1-228, gnl|Hg17|chr15 (38345761-38345988)
               

               
               1-228, gnl|mm7|chr2 (118430978-118431186)
               

               
               1-228, gnl|Mm7|chr2 (118431012-118431239)
               

               
               1-228, gnl|monDom2|scaffold_12 (2226434-2226233)
               

               
               1-228, gnl|oryCun1|scaffold_134673 (3667-3462)
               

               
               1-228, gnl|panTro1|chr16 (38228466-38228674)
               

               
               1-228, gnl|rheMac2|chr7 (18600467-18600675)
               

               
               1-228, gnl|rn3|chr3 (105081828-105082036)
               

               
               1-228, gnl|xenTro1|scaffold_271 (26012-25817)

	1-228, gnl\|bosTau2\|chr10 (23656018-23656245)
	1-228, gnl\|canFam2\|chr30 (10440204-10440412)
	1-228, gnl\|dasNov1\|scaffold_2380 (9542-9750)
	1-228, gnl\|galGal2\|chr5 (2814996-2814813)
	1-228, gnl\|hg17\|chr15 (38345727-38345935)
	1-228, gnl\|Hg17\|chr15 (38345761-38345988)
	1-228, gnl\|mm7\|chr2 (118430978-118431186)
	1-228, gnl\|Mm7\|chr2 (118431012-118431239)
	1-228, gnl\|monDom2\|scaffold_12 (2226434-2226233)
	1-228, gnl\|oryCun1\|scaffold_134673 (3667-3462)
	1-228, gnl\|panTro1\|chr16 (38228466-38228674)
	1-228, gnl\|rheMac2\|chr7 (18600467-18600675)
	1-228, gnl\|rn3\|chr3 (105081828-105082036)
	1-228, gnl\|xenTro1\|scaffold_271 (26012-25817)