Non-Coding RNA Search

Pig1-129L22

Sequence:


               
               GGAAATAATCTCCAAAGGACAAAGGTAAGGGTCTCGGTGTTTGGCTAAGGATCATGGAAT
CATAAGCTGAAAAGACCTTTAAAGATTAATTGACCCAACATTTCCTTTAAAGATGAGGGA
GCAGAGATGCACTGGATTAAATGGCTGGCCCAAGGTCATATGGCGAGTATAGAGCCTGAC
AAAAGGATGCGTTTCCCTGACCCTTTGGTCATCACACCTCGTGGTCTCTGCTCCTCTGGT
TCACCATGACACTGACCAGGTAAGATGCGGTTTTCAGCCTTTACCTGGCAGCTTGCTCTT
AATTTAGGTCTGGCCCACATGCTCCCTGTGGATGGCATTGTGGTTGCTAGTCCTTGGGGA
GAATGTGACGGTGAGGAAGGCTGGAGCTAGGTTTCCCTTAGAAACTGACGGCTAGAGAGC
AGAACAGCTTGGAGGAAATCCCAGAAAGTGACCTTCTGAGTCCAAGAAAGGATTGTTTAT
GGAAGGCAAAGACCCAGCGAGTGCACAAGACGGCACTCGTGCTGAGAGACAGAAGAAGCT
CTACCAGGGCAAGGCCATCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAATAATCTCCAAAGGACAAAGGTAAGGGTCTCGGTGTTTGGCTAAGGATCATGGAAT
CATAAGCTGAAAAGACCTTTAAAGATTAATTGACCCAACATTTCCTTTAAAGATGAGGGA
GCAGAGATGCACTGGATTAAATGGCTGGCCCAAGGTCATATGGCGAGTATAGAGCCTGAC
AAAAGGATGCGTTTCCCTGACCCTTTGGTCATCACACCTCGTGGTCTCTGCTCCTCTGGT
TCACCATGACACTGACCAGGTAAGATGCGGTTTTCAGCCTTTACCTGGCAGCTTGCTCTT
AATTTAGGTCTGGCCCACATGCTCCCTGTGGATGGCATTGTGGTTGCTAGTCCTTGGGGA
GAATGTGACGGTGAGGAAGGCTGGAGCTAGGTTTCCCTTAGAAACTGACGGCTAGAGAGC
AGAACAGCTTGGAGGAAATCCCAGAAAGTGACCTTCTGAGTCCAAGAAAGGATTGTTTAT
GGAAGGCAAAGACCCAGCGAGTGCACAAGACGGCACTCGTGCTGAGAGACAGAAGAAGCT
CTACCAGGGCAAGGCCATCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               266-381, + strand, RNAz p=0.508237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               266-381, + strand, RNAz p=0.508237

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               315-393, + strand, RNAmicro p=0.938186

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               315-393, + strand, RNAmicro p=0.938186

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015039, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015039, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-534, gnl|bosTau2|chr16 (45190493-45189967)
               

               
               1-534, gnl|Hg17|chr1 (179951555-179951009)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-534, gnl|bosTau2|chr16 (45190493-45189967)
               

               
               1-534, gnl|Hg17|chr1 (179951555-179951009)

	1-534, gnl\|bosTau2\|chr16 (45190493-45189967)
	1-534, gnl\|Hg17\|chr1 (179951555-179951009)