Non-Coding RNA Search

Pig1-130J11

Sequence:


               
               GGGGGAGCCAAGCCGACTCTGCAACCTATACCACAGCTCACAGCATGCTGGATCTCCAAC
CCACTGAGTGAGACCAGGAATGAATACCAGTCATATTCGTTTCCACTGCGCCACAATGGG
AACTCCTGATGGTGCTTTATACATATGCCACTGACTCAGTCCCAGCTGCTCTCCAGGGTA
CCTGAAGGGGCCACATGACCTGGGCTCCTTGAGTTACGCCTGCCCAGCTGATGTCCTCCT
CTGAGTTCTTCAAGCCCTGTCACTCCATCAGAGTCTGAGCAGACTCAGGGAAATCACCTA
AATCTGCCAGCTTTAAAATCAATCCCTGTTTGCATTTTGATAGCTCAGGAGATTTTTTCT
TCCCCCATTTGCTGATGGAAAGTCAATTGTCTGAAATACTGACCTGACAGTCTCAGTTTT
TGCTTTAGGTGTATTTATTTAAATAATAATCCCATAGGAGTTCCCGTCGTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGAGCCAAGCCGACTCTGCAACCTATACCACAGCTCACAGCATGCTGGATCTCCAAC
CCACTGAGTGAGACCAGGAATGAATACCAGTCATATTCGTTTCCACTGCGCCACAATGGG
AACTCCTGATGGTGCTTTATACATATGCCACTGACTCAGTCCCAGCTGCTCTCCAGGGTA
CCTGAAGGGGCCACATGACCTGGGCTCCTTGAGTTACGCCTGCCCAGCTGATGTCCTCCT
CTGAGTTCTTCAAGCCCTGTCACTCCATCAGAGTCTGAGCAGACTCAGGGAAATCACCTA
AATCTGCCAGCTTTAAAATCAATCCCTGTTTGCATTTTGATAGCTCAGGAGATTTTTTCT
TCCCCCATTTGCTGATGGAAAGTCAATTGTCTGAAATACTGACCTGACAGTCTCAGTTTT
TGCTTTAGGTGTATTTATTTAAATAATAATCCCATAGGAGTTCCCGTCGTGACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               104-218, + strand, RNAz p=0.572814
               

               
               255-442, - strand, RNAz p=0.903099

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-218, + strand, RNAz p=0.572814
               

               
               255-442, - strand, RNAz p=0.903099

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               104-456, gnl|bosTau2|chr10 (12396707-12396353)
               

               
               104-456, gnl|canFam2|chr8 (7111497-7111751)
               

               
               104-456, gnl|echTel1|scaffold_308455 (46080-46304)
               

               
               104-456, gnl|hg17|chr14 (23640412-23640691)
               

               
               104-456, gnl|Hg17|chr14 (23640463-23641436)
               

               
               104-456, gnl|loxAfr1|scaffold_1306 (91730-91902)
               

               
               104-456, gnl|mm7|chr14 (50413342-50413599)
               

               
               104-456, gnl|Mm7|chr14 (50413376-50413919)
               

               
               104-456, gnl|oryCun1|scaffold_204481 (11641-11808)
               

               
               104-456, gnl|panTro1|chr15 (22542374-22542653)
               

               
               104-456, gnl|rheMac2|chr7 (86991046-86991323)
               

               
               104-456, gnl|rn3|chr15 (33693306-33693588)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-456, gnl|bosTau2|chr10 (12396707-12396353)
               

               
               104-456, gnl|canFam2|chr8 (7111497-7111751)
               

               
               104-456, gnl|echTel1|scaffold_308455 (46080-46304)
               

               
               104-456, gnl|hg17|chr14 (23640412-23640691)
               

               
               104-456, gnl|Hg17|chr14 (23640463-23641436)
               

               
               104-456, gnl|loxAfr1|scaffold_1306 (91730-91902)
               

               
               104-456, gnl|mm7|chr14 (50413342-50413599)
               

               
               104-456, gnl|Mm7|chr14 (50413376-50413919)
               

               
               104-456, gnl|oryCun1|scaffold_204481 (11641-11808)
               

               
               104-456, gnl|panTro1|chr15 (22542374-22542653)
               

               
               104-456, gnl|rheMac2|chr7 (86991046-86991323)
               

               
               104-456, gnl|rn3|chr15 (33693306-33693588)

	104-218, + strand, RNAz p=0.572814
	255-442, - strand, RNAz p=0.903099

	104-456, gnl\|bosTau2\|chr10 (12396707-12396353)
	104-456, gnl\|canFam2\|chr8 (7111497-7111751)
	104-456, gnl\|echTel1\|scaffold_308455 (46080-46304)
	104-456, gnl\|hg17\|chr14 (23640412-23640691)
	104-456, gnl\|Hg17\|chr14 (23640463-23641436)
	104-456, gnl\|loxAfr1\|scaffold_1306 (91730-91902)
	104-456, gnl\|mm7\|chr14 (50413342-50413599)
	104-456, gnl\|Mm7\|chr14 (50413376-50413919)
	104-456, gnl\|oryCun1\|scaffold_204481 (11641-11808)
	104-456, gnl\|panTro1\|chr15 (22542374-22542653)
	104-456, gnl\|rheMac2\|chr7 (86991046-86991323)
	104-456, gnl\|rn3\|chr15 (33693306-33693588)