Non-Coding RNA Search

Pig1-131P12

Sequence:


               
               ACAGCTAGGGGGAGGGAGGTGGCCATGGAAGGGGCACTGGACTGGGCACTTCCCCAGCAA
GAAGGCGGGAGGGGGAGGGCCCCCAGGTGGTCCCCGGAACTCTTCCCTGACTTGGAGAGA
AGGAAGCATTCCACCATCTTCCCCCCCCCAACCCCCCGCTCCATCACACATACACACACA
CACACACTCCAGGGGTGTGTACGCTGGGATCCCTGCCTGGACCGGAGGGAGGCATTTCCT
GGGGATGGCTAATCCTGTGCCCCAGCCAAACCGAGGAGATGCAGTAGGGTGCAACGGCCA
GCGGCTCCAGGAGAGCGGACAAGCACCTGGAGTGGAGAATGTTTCACACCCTAGGGCATG
GTCTCCTTGCAGTATCCTAGAGACGTGGCTGCCCCTCANAGATTGGGGGTCGGGGCTGGG
TCTTTCTTACGGGCATCCCCGAGACAGATTCTCTATCCATTGTTCATCACTCCCAAACAT
AGAGCAAATAAATACAGGATCTCCCTGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCTAGGGGGAGGGAGGTGGCCATGGAAGGGGCACTGGACTGGGCACTTCCCCAGCAA
GAAGGCGGGAGGGGGAGGGCCCCCAGGTGGTCCCCGGAACTCTTCCCTGACTTGGAGAGA
AGGAAGCATTCCACCATCTTCCCCCCCCCAACCCCCCGCTCCATCACACATACACACACA
CACACACTCCAGGGGTGTGTACGCTGGGATCCCTGCCTGGACCGGAGGGAGGCATTTCCT
GGGGATGGCTAATCCTGTGCCCCAGCCAAACCGAGGAGATGCAGTAGGGTGCAACGGCCA
GCGGCTCCAGGAGAGCGGACAAGCACCTGGAGTGGAGAATGTTTCACACCCTAGGGCATG
GTCTCCTTGCAGTATCCTAGAGACGTGGCTGCCCCTCANAGATTGGGGGTCGGGGCTGGG
TCTTTCTTACGGGCATCCCCGAGACAGATTCTCTATCCATTGTTCATCACTCCCAAACAT
AGAGCAAATAAATACAGGATCTCCCTGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-158, - strand, RNAz p=0.908574
               

               
               60-161, - strand, RNAz p=0.717017
               

               
               269-420, + strand, RNAz p=0.990858

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-158, - strand, RNAz p=0.908574
               

               
               60-161, - strand, RNAz p=0.717017
               

               
               269-420, + strand, RNAz p=0.990858

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               243-327, + strand, RNAmicro p=0.995885

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               243-327, + strand, RNAmicro p=0.995885

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-492, gnl|bosTau2|chr8 (28487604-28488118)
               

               
               1-492, gnl|canFam2|chr11 (55310593-55311180)
               

               
               1-492, gnl|dasNov1|scaffold_62744 (3879-3311)
               

               
               1-492, gnl|echTel1|scaffold_98608 (3881-3328)
               

               
               1-492, gnl|galGal2|chrZ_random (8413674-8413053)
               

               
               1-492, gnl|hg17|chr9 (35744280-35744859)
               

               
               1-492, gnl|Hg17|chr9 (35744425-35744889)
               

               
               1-492, gnl|loxAfr1|scaffold_47560 (6289-6865)
               

               
               1-492, gnl|mm7|chr4 (43598217-43598772)
               

               
               1-492, gnl|Mm7|chr4 (43598358-43598798)
               

               
               1-492, gnl|monDom2|scaffold_17 (45772528-45771933)
               

               
               1-492, gnl|oryCun1|scaffold_85530 (600-1182)
               

               
               1-492, gnl|panTro1|chr11 (36303390-36303969)
               

               
               1-492, gnl|rheMac2|chr15 (41766927-41766348)
               

               
               1-492, gnl|rn3|chr5 (60063318-60063841)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr8 (28487604-28488118)
               

               
               1-492, gnl|canFam2|chr11 (55310593-55311180)
               

               
               1-492, gnl|dasNov1|scaffold_62744 (3879-3311)
               

               
               1-492, gnl|echTel1|scaffold_98608 (3881-3328)
               

               
               1-492, gnl|galGal2|chrZ_random (8413674-8413053)
               

               
               1-492, gnl|hg17|chr9 (35744280-35744859)
               

               
               1-492, gnl|Hg17|chr9 (35744425-35744889)
               

               
               1-492, gnl|loxAfr1|scaffold_47560 (6289-6865)
               

               
               1-492, gnl|mm7|chr4 (43598217-43598772)
               

               
               1-492, gnl|Mm7|chr4 (43598358-43598798)
               

               
               1-492, gnl|monDom2|scaffold_17 (45772528-45771933)
               

               
               1-492, gnl|oryCun1|scaffold_85530 (600-1182)
               

               
               1-492, gnl|panTro1|chr11 (36303390-36303969)
               

               
               1-492, gnl|rheMac2|chr15 (41766927-41766348)
               

               
               1-492, gnl|rn3|chr5 (60063318-60063841)

	1-158, - strand, RNAz p=0.908574
	60-161, - strand, RNAz p=0.717017
	269-420, + strand, RNAz p=0.990858

	1-492, gnl\|bosTau2\|chr8 (28487604-28488118)
	1-492, gnl\|canFam2\|chr11 (55310593-55311180)
	1-492, gnl\|dasNov1\|scaffold_62744 (3879-3311)
	1-492, gnl\|echTel1\|scaffold_98608 (3881-3328)
	1-492, gnl\|galGal2\|chrZ_random (8413674-8413053)
	1-492, gnl\|hg17\|chr9 (35744280-35744859)
	1-492, gnl\|Hg17\|chr9 (35744425-35744889)
	1-492, gnl\|loxAfr1\|scaffold_47560 (6289-6865)
	1-492, gnl\|mm7\|chr4 (43598217-43598772)
	1-492, gnl\|Mm7\|chr4 (43598358-43598798)
	1-492, gnl\|monDom2\|scaffold_17 (45772528-45771933)
	1-492, gnl\|oryCun1\|scaffold_85530 (600-1182)
	1-492, gnl\|panTro1\|chr11 (36303390-36303969)
	1-492, gnl\|rheMac2\|chr15 (41766927-41766348)
	1-492, gnl\|rn3\|chr5 (60063318-60063841)