Non-Coding RNA Search

Pig1-132B04a

Sequence:


               
               CAGAACTTACCCTTGTCTATGATTGTGGCAATTGATGAGATCTCCTTGTTCCTGGATACA
GAGGTACTGAGCAGTGATGACCGAAAGGAGAATGCCTTGCAGACAGTGGGCACAGGGGAA
CCTTGGTGTGATGTGGTGCTGGCCATTCTGGCAGATGGCACTGTGCTGCCTACCCTGGTT
TTCTACCGAGGACAAATGGATCAGCCTGCAAATGTGCCACACTCTATATTGCTGGAGGCA
AAGGAGAGTGGCTACAGTGACGATGAGATCATGGAGCTGTGGTCATCCCGAGTGTGGCAG
AAGCACACAGCTTGCCAGCGCAGCAAAGGTATGCTTGTGATGGACTGTCACCGCACTCAC
TTGTCAGAAGAGGTGCTGGCCATGCTTAGTGCCTCTAGCACTTTGCCTGCAGATGTACCA
ACAGGAAGTTCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAACTTACCCTTGTCTATGATTGTGGCAATTGATGAGATCTCCTTGTTCCTGGATACA
GAGGTACTGAGCAGTGATGACCGAAAGGAGAATGCCTTGCAGACAGTGGGCACAGGGGAA
CCTTGGTGTGATGTGGTGCTGGCCATTCTGGCAGATGGCACTGTGCTGCCTACCCTGGTT
TTCTACCGAGGACAAATGGATCAGCCTGCAAATGTGCCACACTCTATATTGCTGGAGGCA
AAGGAGAGTGGCTACAGTGACGATGAGATCATGGAGCTGTGGTCATCCCGAGTGTGGCAG
AAGCACACAGCTTGCCAGCGCAGCAAAGGTATGCTTGTGATGGACTGTCACCGCACTCAC
TTGTCAGAAGAGGTGCTGGCCATGCTTAGTGCCTCTAGCACTTTGCCTGCAGATGTACCA
ACAGGAAGTTCTTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-359, + strand, RNAz p=0.974085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-359, + strand, RNAz p=0.974085

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-425, gnl|bosTau2|chr3 (11673696-11674120)
               

               
               1-425, gnl|canFam2|chr17 (63544982-63545736)
               

               
               1-425, gnl|danRer3|chr16 (34634622-34633852)
               

               
               1-425, gnl|dasNov1|scaffold_23544 (4638-5392)
               

               
               1-425, gnl|echTel1|scaffold_279827 (6208-6962)
               

               
               1-425, gnl|fr1|chrUn (152569654-152568885)
               

               
               1-425, gnl|galGal2|chrUn (97078176-97077422)
               

               
               1-425, gnl|hg17|chr1 (148190756-148191510)
               

               
               1-425, gnl|Hg17|chr1 (148191241-148190817)
               

               
               1-425, gnl|loxAfr1|scaffold_30317 (9300-8546)
               

               
               1-425, gnl|mm7|chr3 (94753869-94753115)
               

               
               1-425, gnl|Mm7|chr3 (94753382-94753806)
               

               
               1-425, gnl|monDom2|scaffold_44 (4608872-4609626)
               

               
               1-425, gnl|oryCun1|scaffold_204877 (809-1563)
               

               
               1-425, gnl|panTro1|chr1 (129941234-129941988)
               

               
               1-425, gnl|rheMac2|chr1 (129839322-129840076)
               

               
               1-425, gnl|rn3|chr2 (189728025-189727271)
               

               
               1-425, gnl|tetNig1|chrUn_random (46929914-46930666)
               

               
               1-425, gnl|xenTro1|scaffold_918 (99863-100611)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-425, gnl|bosTau2|chr3 (11673696-11674120)
               

               
               1-425, gnl|canFam2|chr17 (63544982-63545736)
               

               
               1-425, gnl|danRer3|chr16 (34634622-34633852)
               

               
               1-425, gnl|dasNov1|scaffold_23544 (4638-5392)
               

               
               1-425, gnl|echTel1|scaffold_279827 (6208-6962)
               

               
               1-425, gnl|fr1|chrUn (152569654-152568885)
               

               
               1-425, gnl|galGal2|chrUn (97078176-97077422)
               

               
               1-425, gnl|hg17|chr1 (148190756-148191510)
               

               
               1-425, gnl|Hg17|chr1 (148191241-148190817)
               

               
               1-425, gnl|loxAfr1|scaffold_30317 (9300-8546)
               

               
               1-425, gnl|mm7|chr3 (94753869-94753115)
               

               
               1-425, gnl|Mm7|chr3 (94753382-94753806)
               

               
               1-425, gnl|monDom2|scaffold_44 (4608872-4609626)
               

               
               1-425, gnl|oryCun1|scaffold_204877 (809-1563)
               

               
               1-425, gnl|panTro1|chr1 (129941234-129941988)
               

               
               1-425, gnl|rheMac2|chr1 (129839322-129840076)
               

               
               1-425, gnl|rn3|chr2 (189728025-189727271)
               

               
               1-425, gnl|tetNig1|chrUn_random (46929914-46930666)
               

               
               1-425, gnl|xenTro1|scaffold_918 (99863-100611)

	1-425, gnl\|bosTau2\|chr3 (11673696-11674120)
	1-425, gnl\|canFam2\|chr17 (63544982-63545736)
	1-425, gnl\|danRer3\|chr16 (34634622-34633852)
	1-425, gnl\|dasNov1\|scaffold_23544 (4638-5392)
	1-425, gnl\|echTel1\|scaffold_279827 (6208-6962)
	1-425, gnl\|fr1\|chrUn (152569654-152568885)
	1-425, gnl\|galGal2\|chrUn (97078176-97077422)
	1-425, gnl\|hg17\|chr1 (148190756-148191510)
	1-425, gnl\|Hg17\|chr1 (148191241-148190817)
	1-425, gnl\|loxAfr1\|scaffold_30317 (9300-8546)
	1-425, gnl\|mm7\|chr3 (94753869-94753115)
	1-425, gnl\|Mm7\|chr3 (94753382-94753806)
	1-425, gnl\|monDom2\|scaffold_44 (4608872-4609626)
	1-425, gnl\|oryCun1\|scaffold_204877 (809-1563)
	1-425, gnl\|panTro1\|chr1 (129941234-129941988)
	1-425, gnl\|rheMac2\|chr1 (129839322-129840076)
	1-425, gnl\|rn3\|chr2 (189728025-189727271)
	1-425, gnl\|tetNig1\|chrUn_random (46929914-46930666)
	1-425, gnl\|xenTro1\|scaffold_918 (99863-100611)