Non-Coding RNA Search

Pig1-132B16

Sequence:


               
               GGGCGGGAGGAGGGAGCGCGGACGCAGGGGGCGGGGAGGTGGCGCCCAGCGCCGCGGCTC
CCGTCGTCTTCCCGGCCCTGCACGGGGACTCGCTCTACGGCGCCGGCGGCGGCGCCTCCT
CGGACTATGGCGCCTTCTACCCGCGCCCCGTGGCCCCCGGCGGTGCAGGCCTCCCGGCCG
CGGTCGGCGGCTCCCGCCTCGGCTACAACAACTACTTCTACGGGCAGCTGCGTCCCGACG
CCCCCAGGCTACGAGGGCCCCGGCTCGGTGCTGGTGTCCCCTGTGCCACACCAGATGCTG
CCCTACATGAACGTGGGCACCCTGTCGCGCACGGAACTGCAGCTCCTCAACCAGCTGCAC
TGCCGGCGGAAGCGGCGGCACCGCACCATCTTCACCGATGAACAGCTCGAAGCCCTGGAG
AACCTCTTCCAGGAGACCAAGTACCCAGACGTGGGTACCCGCGAGCAGCTGGCTCGGAAG
GTGCACCTCCGCGAGGAGAAAGTGGAGGTCTGGTTCAAAAACCGCCGCGCCAAATGGAGG
CGGCAGAAGCGGTCTTCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGGGAGGAGGGAGCGCGGACGCAGGGGGCGGGGAGGTGGCGCCCAGCGCCGCGGCTC
CCGTCGTCTTCCCGGCCCTGCACGGGGACTCGCTCTACGGCGCCGGCGGCGGCGCCTCCT
CGGACTATGGCGCCTTCTACCCGCGCCCCGTGGCCCCCGGCGGTGCAGGCCTCCCGGCCG
CGGTCGGCGGCTCCCGCCTCGGCTACAACAACTACTTCTACGGGCAGCTGCGTCCCGACG
CCCCCAGGCTACGAGGGCCCCGGCTCGGTGCTGGTGTCCCCTGTGCCACACCAGATGCTG
CCCTACATGAACGTGGGCACCCTGTCGCGCACGGAACTGCAGCTCCTCAACCAGCTGCAC
TGCCGGCGGAAGCGGCGGCACCGCACCATCTTCACCGATGAACAGCTCGAAGCCCTGGAG
AACCTCTTCCAGGAGACCAAGTACCCAGACGTGGGTACCCGCGAGCAGCTGGCTCGGAAG
GTGCACCTCCGCGAGGAGAAAGTGGAGGTCTGGTTCAAAAACCGCCGCGCCAAATGGAGG
CGGCAGAAGCGGTCTTCGTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61837379|ref|XP_592774.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837379|ref|XP_592774.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               246-444, - strand, RNAz p=0.718056

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               246-444, - strand, RNAz p=0.718056

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               39-245, gnl|bosTau2|chr21 (40500467-40500678)
               

               
               39-245, gnl|Hg17|chr14 (94306033-94305825)
               

               
               39-245, gnl|Mm7|chr12 (101967365-101967157)
               


               
               246-527, gnl|bosTau2|chr21 (40501226-40501507)
               

               
               246-527, gnl|Hg17|chr14 (94305309-94305028)
               

               
               246-527, gnl|Mm7|chr12 (101966576-101966295)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-245, gnl|bosTau2|chr21 (40500467-40500678)
               

               
               39-245, gnl|Hg17|chr14 (94306033-94305825)
               

               
               39-245, gnl|Mm7|chr12 (101967365-101967157)
               


               
               246-527, gnl|bosTau2|chr21 (40501226-40501507)
               

               
               246-527, gnl|Hg17|chr14 (94305309-94305028)
               

               
               246-527, gnl|Mm7|chr12 (101966576-101966295)

	39-245, gnl\|bosTau2\|chr21 (40500467-40500678)
	39-245, gnl\|Hg17\|chr14 (94306033-94305825)
	39-245, gnl\|Mm7\|chr12 (101967365-101967157)

	246-527, gnl\|bosTau2\|chr21 (40501226-40501507)
	246-527, gnl\|Hg17\|chr14 (94305309-94305028)
	246-527, gnl\|Mm7\|chr12 (101966576-101966295)