Non-Coding RNA Search

Pig1-132L04

Sequence:


               
               TTCCCACGCACGGTTGGTCCCGGGCCGATGTCCCAGGTGAGTGGCCAGCGTCCCCCTCAC
TGCGACGCGCCGCATGGAGCCCCCAGCGCAGCCCCGGACCCAGCCCAGACTACATCCCTC
CTGCCTGGGCTGGAGGTAGTGACAGGACCTGCTCATCCTGCGGAGGCAGCGCTAGAGGAG
GGCTCCCTGGAGGAGGCATCACCCTCCATGCCCCAAGGCAATGGCCCTGGGATCCCCCAG
GCCCTGGACAGCACTGACCTCGATGTCCCCATAAAAGCTGAGACACGCCAGCCTCAGGGG
AATTCCTTGGGCTGCACCCCACTAGTGGCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCACGCACGGTTGGTCCCGGGCCGATGTCCCAGGTGAGTGGCCAGCGTCCCCCTCAC
TGCGACGCGCCGCATGGAGCCCCCAGCGCAGCCCCGGACCCAGCCCAGACTACATCCCTC
CTGCCTGGGCTGGAGGTAGTGACAGGACCTGCTCATCCTGCGGAGGCAGCGCTAGAGGAG
GGCTCCCTGGAGGAGGCATCACCCTCCATGCCCCAAGGCAATGGCCCTGGGATCCCCCAG
GCCCTGGACAGCACTGACCTCGATGTCCCCATAAAAGCTGAGACACGCCAGCCTCAGGGG
AATTCCTTGGGCTGCACCCCACTAGTGGCGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               152-300, - strand, RNAz p=0.941202
               

               
               185-300, - strand, RNAz p=0.745821

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-300, - strand, RNAz p=0.941202
               

               
               185-300, - strand, RNAz p=0.745821

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               102-300, gnl|bosTau2|chr23 (13805427-13805226)
               

               
               102-300, gnl|canFam2|chr12 (13337352-13337503)
               

               
               102-300, gnl|dasNov1|scaffold_272452 (173-321)
               

               
               102-300, gnl|echTel1|scaffold_99299 (2376-2526)
               

               
               102-300, gnl|galGal2|chr26 (3382012-3382158)
               

               
               102-300, gnl|hg17|chr6 (41721830-41721981)
               

               
               102-300, gnl|Hg17|chr6 (41721840-41722038)
               

               
               102-300, gnl|loxAfr1|scaffold_22724 (32195-32346)
               

               
               102-300, gnl|monDom2|scaffold_42 (1478254-1478094)
               

               
               102-300, gnl|oryCun1|scaffold_211695 (49376-49225)
               

               
               102-300, gnl|panTro1|chr5 (42295521-42295672)
               

               
               102-300, gnl|rheMac2|chr4 (41478392-41478543)
               

               
               102-300, gnl|rn3|chr9 (8632198-8632348)
               

               
               102-300, gnl|xenTro1|scaffold_1087 (286169-286312)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-300, gnl|bosTau2|chr23 (13805427-13805226)
               

               
               102-300, gnl|canFam2|chr12 (13337352-13337503)
               

               
               102-300, gnl|dasNov1|scaffold_272452 (173-321)
               

               
               102-300, gnl|echTel1|scaffold_99299 (2376-2526)
               

               
               102-300, gnl|galGal2|chr26 (3382012-3382158)
               

               
               102-300, gnl|hg17|chr6 (41721830-41721981)
               

               
               102-300, gnl|Hg17|chr6 (41721840-41722038)
               

               
               102-300, gnl|loxAfr1|scaffold_22724 (32195-32346)
               

               
               102-300, gnl|monDom2|scaffold_42 (1478254-1478094)
               

               
               102-300, gnl|oryCun1|scaffold_211695 (49376-49225)
               

               
               102-300, gnl|panTro1|chr5 (42295521-42295672)
               

               
               102-300, gnl|rheMac2|chr4 (41478392-41478543)
               

               
               102-300, gnl|rn3|chr9 (8632198-8632348)
               

               
               102-300, gnl|xenTro1|scaffold_1087 (286169-286312)

	152-300, - strand, RNAz p=0.941202
	185-300, - strand, RNAz p=0.745821

	102-300, gnl\|bosTau2\|chr23 (13805427-13805226)
	102-300, gnl\|canFam2\|chr12 (13337352-13337503)
	102-300, gnl\|dasNov1\|scaffold_272452 (173-321)
	102-300, gnl\|echTel1\|scaffold_99299 (2376-2526)
	102-300, gnl\|galGal2\|chr26 (3382012-3382158)
	102-300, gnl\|hg17\|chr6 (41721830-41721981)
	102-300, gnl\|Hg17\|chr6 (41721840-41722038)
	102-300, gnl\|loxAfr1\|scaffold_22724 (32195-32346)
	102-300, gnl\|monDom2\|scaffold_42 (1478254-1478094)
	102-300, gnl\|oryCun1\|scaffold_211695 (49376-49225)
	102-300, gnl\|panTro1\|chr5 (42295521-42295672)
	102-300, gnl\|rheMac2\|chr4 (41478392-41478543)
	102-300, gnl\|rn3\|chr9 (8632198-8632348)
	102-300, gnl\|xenTro1\|scaffold_1087 (286169-286312)