Non-Coding RNA Search

Pig1-132P18

Sequence:


               
               GGAACTTCCATATGCTGTGGGTGAAAGCAGAGGGGGCGGGGGGTGGAGAGTGGAGCTGAA
AAGAGGGCACAGTCATCTGGCCGATCTCCGATGTCCTGCCCCTTGCACGCACGTCAACGT
TGACCTCAGGACCCCAGCCTCCCCCGTACGTCGTCTCGGAGGTTTCTGAGGCCTGGGCAT
GATTTCTCCATCCTTTAGGGCGGGCGCGTTGCCTGGGTGGCCTCATTTCGGAGAGGGGGT
TACCTCCCAGGACTCTACCCGCCACCAGCCCGGGCCCAACAGTCTCTCCCTCCTCCTGTC
CCCTGTGCAGCTCCTGAGCAGCCTGACCGAGTGCCTGACGGTGGACCCCCTCAGCACCAG
CGTCTGGAGGCAGCTGTACCCCAAGCACCTGCCACAGTCCAGGCAGGTGGTGGTGGTGGG
ATGGNGGGGGGGTACCTGCTCTGATCCACACAGAAAAGCCTTACCTCGTGCCTCCCAGCA
TGTCCCTAAAAGCAGAAGGGGAGTGTTCCTCACTGTTCAGGTTCCGCGGGAGTTGCCGTG
GGCCTCTAGGAAGCTGCTTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACTTCCATATGCTGTGGGTGAAAGCAGAGGGGGCGGGGGGTGGAGAGTGGAGCTGAA
AAGAGGGCACAGTCATCTGGCCGATCTCCGATGTCCTGCCCCTTGCACGCACGTCAACGT
TGACCTCAGGACCCCAGCCTCCCCCGTACGTCGTCTCGGAGGTTTCTGAGGCCTGGGCAT
GATTTCTCCATCCTTTAGGGCGGGCGCGTTGCCTGGGTGGCCTCATTTCGGAGAGGGGGT
TACCTCCCAGGACTCTACCCGCCACCAGCCCGGGCCCAACAGTCTCTCCCTCCTCCTGTC
CCCTGTGCAGCTCCTGAGCAGCCTGACCGAGTGCCTGACGGTGGACCCCCTCAGCACCAG
CGTCTGGAGGCAGCTGTACCCCAAGCACCTGCCACAGTCCAGGCAGGTGGTGGTGGTGGG
ATGGNGGGGGGGTACCTGCTCTGATCCACACAGAAAAGCCTTACCTCGTGCCTCCCAGCA
TGTCCCTAAAAGCAGAAGGGGAGTGTTCCTCACTGTTCAGGTTCCGCGGGAGTTGCCGTG
GGCCTCTAGGAAGCTGCTTCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               150-293, - strand, RNAz p=0.73937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-293, - strand, RNAz p=0.73937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               47-563, gnl|bosTau2|chr11 (55416036-55416560)
               

               
               47-563, gnl|Hg17|chr2 (27172383-27172889)
               

               
               47-563, gnl|Mm7|chr5 (29906252-29906716)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-563, gnl|bosTau2|chr11 (55416036-55416560)
               

               
               47-563, gnl|Hg17|chr2 (27172383-27172889)
               

               
               47-563, gnl|Mm7|chr5 (29906252-29906716)

	47-563, gnl\|bosTau2\|chr11 (55416036-55416560)
	47-563, gnl\|Hg17\|chr2 (27172383-27172889)
	47-563, gnl\|Mm7\|chr5 (29906252-29906716)