Non-Coding RNA Search

Pig1-134H13

Sequence:


               
               GAAAGAACCCTAGTAATTATAAACTTCAAACAAATCTAGCAAGTTAATATTGAGTTTGTT
CATATGAAATGTGTTCACCATAATAATAAAAACTGGCAATTAAATTGTTGATTTTTCCAT
TAATCACATCTTAGGTCTGAACAATAAGAAGAAAATATTCTTAACATTGGAAATATATTT
CAAGCCAGCAAGATATAAACCAGGCTGAATATTTAAAGGGAAAAAAAATGTTTGCTTACT
ATGCCAATAAAAGAAAAACATCTGAAAGTTTTGAAAGTTAGACTCAAATGAAGAACAAAG
CAATCTTTACTCAGCATTCACAGGGCCAGCCTTCCTTTGTGAATATTACAAAGATTTCCT
TCTTCCTTATTGGTTTAAATTCTAAGCCAATAGGAAAAGAACACATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAACCCTAGTAATTATAAACTTCAAACAAATCTAGCAAGTTAATATTGAGTTTGTT
CATATGAAATGTGTTCACCATAATAATAAAAACTGGCAATTAAATTGTTGATTTTTCCAT
TAATCACATCTTAGGTCTGAACAATAAGAAGAAAATATTCTTAACATTGGAAATATATTT
CAAGCCAGCAAGATATAAACCAGGCTGAATATTTAAAGGGAAAAAAAATGTTTGCTTACT
ATGCCAATAAAAGAAAAACATCTGAAAGTTTTGAAAGTTAGACTCAAATGAAGAACAAAG
CAATCTTTACTCAGCATTCACAGGGCCAGCCTTCCTTTGTGAATATTACAAAGATTTCCT
TCTTCCTTATTGGTTTAAATTCTAAGCCAATAGGAAAAGAACACATCTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               139-248, - strand, RNAz p=0.725527
               

               
               260-410, - strand, RNAz p=0.989375

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-248, - strand, RNAz p=0.725527
               

               
               260-410, - strand, RNAz p=0.989375

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               296-409, - strand, RNAmicro p=0.999997

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               296-409, - strand, RNAmicro p=0.999997

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-410, gnl|bosTau2|chr6 (32433375-32432972)
               

               
               1-410, gnl|canFam2|chr3 (75268149-75267730)
               

               
               1-410, gnl|dasNov1|scaffold_4490 (57760-57291)
               

               
               1-410, gnl|hg17|chr4 (39878797-39879236)
               

               
               1-410, gnl|Hg17|chr4 (39879308-39878892)
               

               
               1-410, gnl|mm7|chr5 (65116807-65117205)
               

               
               1-410, gnl|Mm7|chr5 (65117283-65116877)
               

               
               1-410, gnl|monDom2|scaffold_26 (5173152-5173542)
               

               
               1-410, gnl|oryCun1|scaffold_175884 (13041-13453)
               

               
               1-410, gnl|panTro1|chr3 (42574629-42575068)
               

               
               1-410, gnl|rheMac2|chr5 (35091327-35091765)
               

               
               1-410, gnl|rn3|chr14 (45173613-45173228)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-410, gnl|bosTau2|chr6 (32433375-32432972)
               

               
               1-410, gnl|canFam2|chr3 (75268149-75267730)
               

               
               1-410, gnl|dasNov1|scaffold_4490 (57760-57291)
               

               
               1-410, gnl|hg17|chr4 (39878797-39879236)
               

               
               1-410, gnl|Hg17|chr4 (39879308-39878892)
               

               
               1-410, gnl|mm7|chr5 (65116807-65117205)
               

               
               1-410, gnl|Mm7|chr5 (65117283-65116877)
               

               
               1-410, gnl|monDom2|scaffold_26 (5173152-5173542)
               

               
               1-410, gnl|oryCun1|scaffold_175884 (13041-13453)
               

               
               1-410, gnl|panTro1|chr3 (42574629-42575068)
               

               
               1-410, gnl|rheMac2|chr5 (35091327-35091765)
               

               
               1-410, gnl|rn3|chr14 (45173613-45173228)

	139-248, - strand, RNAz p=0.725527
	260-410, - strand, RNAz p=0.989375

	1-410, gnl\|bosTau2\|chr6 (32433375-32432972)
	1-410, gnl\|canFam2\|chr3 (75268149-75267730)
	1-410, gnl\|dasNov1\|scaffold_4490 (57760-57291)
	1-410, gnl\|hg17\|chr4 (39878797-39879236)
	1-410, gnl\|Hg17\|chr4 (39879308-39878892)
	1-410, gnl\|mm7\|chr5 (65116807-65117205)
	1-410, gnl\|Mm7\|chr5 (65117283-65116877)
	1-410, gnl\|monDom2\|scaffold_26 (5173152-5173542)
	1-410, gnl\|oryCun1\|scaffold_175884 (13041-13453)
	1-410, gnl\|panTro1\|chr3 (42574629-42575068)
	1-410, gnl\|rheMac2\|chr5 (35091327-35091765)
	1-410, gnl\|rn3\|chr14 (45173613-45173228)