Non-Coding RNA Search

Pig1-13F02

Sequence:


               
               GCGATGGGCCCCCGATGCTCAACCCCCTGGTGGATGATTATGTGGCCTCTGAGGGTGCAG
TGCAGCGGGTGCTGGTCCCTGCTTACGCCAAGCAGCTTTCACCAGCCACACAACTGGCTA
TCCAGAGGGCCACCTCAGAGACAGGGCTGGAAAATGGAAGCAAGCTGCCACCACCCCGTC
CCGAAGACATGCTCAGTGCCGCCGCGGCCCTGGAAGGTGCCTTGGAAGAGCCAGGCCCTG
CAGCAACTGGGGAGCTGAGACACTCTCTAGGGTTTACCCCCTCCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATGGGCCCCCGATGCTCAACCCCCTGGTGGATGATTATGTGGCCTCTGAGGGTGCAG
TGCAGCGGGTGCTGGTCCCTGCTTACGCCAAGCAGCTTTCACCAGCCACACAACTGGCTA
TCCAGAGGGCCACCTCAGAGACAGGGCTGGAAAATGGAAGCAAGCTGCCACCACCCCGTC
CCGAAGACATGCTCAGTGCCGCCGCGGCCCTGGAAGGTGCCTTGGAAGAGCCAGGCCCTG
CAGCAACTGGGGAGCTGAGACACTCTCTAGGGTTTACCCCCTCCCCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               27-145, + strand, RNAz p=0.638537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               27-145, + strand, RNAz p=0.638537

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               27-288, gnl|bosTau2|chr10 (14053020-14053281)
               

               
               27-288, gnl|canFam2|chr8 (6315014-6315245)
               

               
               27-288, gnl|hg17|chr14 (22535011-22535242)
               

               
               27-288, gnl|Hg17|chr14 (22535317-22535056)
               

               
               27-288, gnl|loxAfr1|scaffold_152260 (4490-4258)
               

               
               27-288, gnl|mm7|chr14 (49457093-49457321)
               

               
               27-288, gnl|Mm7|chr14 (49457396-49457138)
               

               
               27-288, gnl|monDom2|scaffold_12 (26832209-26831978)
               

               
               27-288, gnl|oryCun1|scaffold_199976 (45881-46112)
               

               
               27-288, gnl|rheMac2|chr7 (85817856-85818087)
               

               
               27-288, gnl|rn3|chr15 (32682864-32683092)
               

               
               27-288, gnl|xenTro1|scaffold_963 (342865-343126)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-288, gnl|bosTau2|chr10 (14053020-14053281)
               

               
               27-288, gnl|canFam2|chr8 (6315014-6315245)
               

               
               27-288, gnl|hg17|chr14 (22535011-22535242)
               

               
               27-288, gnl|Hg17|chr14 (22535317-22535056)
               

               
               27-288, gnl|loxAfr1|scaffold_152260 (4490-4258)
               

               
               27-288, gnl|mm7|chr14 (49457093-49457321)
               

               
               27-288, gnl|Mm7|chr14 (49457396-49457138)
               

               
               27-288, gnl|monDom2|scaffold_12 (26832209-26831978)
               

               
               27-288, gnl|oryCun1|scaffold_199976 (45881-46112)
               

               
               27-288, gnl|rheMac2|chr7 (85817856-85818087)
               

               
               27-288, gnl|rn3|chr15 (32682864-32683092)
               

               
               27-288, gnl|xenTro1|scaffold_963 (342865-343126)

	27-288, gnl\|bosTau2\|chr10 (14053020-14053281)
	27-288, gnl\|canFam2\|chr8 (6315014-6315245)
	27-288, gnl\|hg17\|chr14 (22535011-22535242)
	27-288, gnl\|Hg17\|chr14 (22535317-22535056)
	27-288, gnl\|loxAfr1\|scaffold_152260 (4490-4258)
	27-288, gnl\|mm7\|chr14 (49457093-49457321)
	27-288, gnl\|Mm7\|chr14 (49457396-49457138)
	27-288, gnl\|monDom2\|scaffold_12 (26832209-26831978)
	27-288, gnl\|oryCun1\|scaffold_199976 (45881-46112)
	27-288, gnl\|rheMac2\|chr7 (85817856-85818087)
	27-288, gnl\|rn3\|chr15 (32682864-32683092)
	27-288, gnl\|xenTro1\|scaffold_963 (342865-343126)