Non-Coding RNA Search

Pig1-13H23

Sequence:


               
               GCACAGGGAGAAGCAGAGCTTTCTGAACTTGGCTGAGCTTGGGGGTAGGGAAGGGGCCTT
CTCAGGCCTCTCTGCCTCCAGCCGGGTTTTATAAAGTGCTGACAAAATTGGGAATAAAGA
GGCTTaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGGGAGAAGCAGAGCTTTCTGAACTTGGCTGAGCTTGGGGGTAGGGAAGGGGCCTT
CTCAGGCCTCTCTGCCTCCAGCCGGGTTTTATAAAGTGCTGACAAAATTGGGAATAAAGA
GGCTTaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-93, + strand, RNAz p=0.968617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-93, + strand, RNAz p=0.968617

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC073912, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC073912, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-131, gnl|bosTau2|chr2 (68782590-68782460)
               

               
               2-131, gnl|canFam2|chr37 (29047874-29048133)
               

               
               2-131, gnl|galGal2|chr7 (22912814-22912565)
               

               
               2-131, gnl|hg17|chr2 (220228748-220229007)
               

               
               2-131, gnl|Hg17|chr2 (220228865-220228999)
               

               
               2-131, gnl|mm7|chr1 (75700282-75700554)
               

               
               2-131, gnl|Mm7|chr1 (75700393-75700534)
               

               
               2-131, gnl|monDom2|scaffold_864 (11862-11539)
               

               
               2-131, gnl|oryCun1|scaffold_211330 (92248-92014)
               

               
               2-131, gnl|panTro1|chr13 (110393843-110394102)
               

               
               2-131, gnl|rheMac2|chr12 (83386559-83386818)
               

               
               2-131, gnl|rn3|chr9 (74896472-74896778)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-131, gnl|bosTau2|chr2 (68782590-68782460)
               

               
               2-131, gnl|canFam2|chr37 (29047874-29048133)
               

               
               2-131, gnl|galGal2|chr7 (22912814-22912565)
               

               
               2-131, gnl|hg17|chr2 (220228748-220229007)
               

               
               2-131, gnl|Hg17|chr2 (220228865-220228999)
               

               
               2-131, gnl|mm7|chr1 (75700282-75700554)
               

               
               2-131, gnl|Mm7|chr1 (75700393-75700534)
               

               
               2-131, gnl|monDom2|scaffold_864 (11862-11539)
               

               
               2-131, gnl|oryCun1|scaffold_211330 (92248-92014)
               

               
               2-131, gnl|panTro1|chr13 (110393843-110394102)
               

               
               2-131, gnl|rheMac2|chr12 (83386559-83386818)
               

               
               2-131, gnl|rn3|chr9 (74896472-74896778)

	2-131, gnl\|bosTau2\|chr2 (68782590-68782460)
	2-131, gnl\|canFam2\|chr37 (29047874-29048133)
	2-131, gnl\|galGal2\|chr7 (22912814-22912565)
	2-131, gnl\|hg17\|chr2 (220228748-220229007)
	2-131, gnl\|Hg17\|chr2 (220228865-220228999)
	2-131, gnl\|mm7\|chr1 (75700282-75700554)
	2-131, gnl\|Mm7\|chr1 (75700393-75700534)
	2-131, gnl\|monDom2\|scaffold_864 (11862-11539)
	2-131, gnl\|oryCun1\|scaffold_211330 (92248-92014)
	2-131, gnl\|panTro1\|chr13 (110393843-110394102)
	2-131, gnl\|rheMac2\|chr12 (83386559-83386818)
	2-131, gnl\|rn3\|chr9 (74896472-74896778)