Non-Coding RNA Search

Pig1-13L22

Sequence:


               
               GCCGGCCTCCGCCCGGCTGCGAGCGGTGAGAGCGAGCGGCGGGTGCACCCGACGCTGCTA
GACCGGGAAGGGATGCGGGTTTTGAGTTTCTTCTGCAGGAGGGGCTTTGCGGGGGAGGGG
AGGCCTAGGGGCACTAGCAGCCGCAGACCCTCGGGCTCTTTCCTCCGCCTTCCTGCCTTT
ACCCCCTTTCCAGAAGGGCCGGGACGGGAGGAAGGGCCGCGGTTGAGCATTTCCCTGGAG
CCCTCCTTTCCCCCCATCCCATATGTTTAGCTCGCCTTCCAGATGTTCCTTTTCATCAGG
CTGTCGCTTCTCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGCCTCCGCCCGGCTGCGAGCGGTGAGAGCGAGCGGCGGGTGCACCCGACGCTGCTA
GACCGGGAAGGGATGCGGGTTTTGAGTTTCTTCTGCAGGAGGGGCTTTGCGGGGGAGGGG
AGGCCTAGGGGCACTAGCAGCCGCAGACCCTCGGGCTCTTTCCTCCGCCTTCCTGCCTTT
ACCCCCTTTCCAGAAGGGCCGGGACGGGAGGAAGGGCCGCGGTTGAGCATTTCCCTGGAG
CCCTCCTTTCCCCCCATCCCATATGTTTAGCTCGCCTTCCAGATGTTCCTTTTCATCAGG
CTGTCGCTTCTCGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.961795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.961795

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               95-227, + strand, RNAmicro p=0.995746
               

               
               92-284, - strand, RNAmicro p=0.956676

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               95-227, + strand, RNAmicro p=0.995746
               

               
               92-284, - strand, RNAmicro p=0.956676

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-315, gnl|bosTau2|chr25 (24666163-24666488)
               

               
               1-315, gnl|canFam2|chr6 (21012481-21013063)
               

               
               1-315, gnl|echTel1|scaffold_85062 (9163-8561)
               

               
               1-315, gnl|hg17|chr16 (29880706-29881304)
               

               
               1-315, gnl|Hg17|chr16 (29880930-29881245)
               

               
               1-315, gnl|loxAfr1|scaffold_17012 (5666-5040)
               

               
               1-315, gnl|mm7|chr7 (122995018-122994421)
               

               
               1-315, gnl|Mm7|chr7 (122994806-122994467)
               

               
               1-315, gnl|panTro1|chr18 (30641694-30642293)
               

               
               1-315, gnl|rheMac2|chr20 (27929633-27930231)
               

               
               1-315, gnl|rn3|chr1 (186228054-186227461)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-315, gnl|bosTau2|chr25 (24666163-24666488)
               

               
               1-315, gnl|canFam2|chr6 (21012481-21013063)
               

               
               1-315, gnl|echTel1|scaffold_85062 (9163-8561)
               

               
               1-315, gnl|hg17|chr16 (29880706-29881304)
               

               
               1-315, gnl|Hg17|chr16 (29880930-29881245)
               

               
               1-315, gnl|loxAfr1|scaffold_17012 (5666-5040)
               

               
               1-315, gnl|mm7|chr7 (122995018-122994421)
               

               
               1-315, gnl|Mm7|chr7 (122994806-122994467)
               

               
               1-315, gnl|panTro1|chr18 (30641694-30642293)
               

               
               1-315, gnl|rheMac2|chr20 (27929633-27930231)
               

               
               1-315, gnl|rn3|chr1 (186228054-186227461)

	95-227, + strand, RNAmicro p=0.995746
	92-284, - strand, RNAmicro p=0.956676

	1-315, gnl\|bosTau2\|chr25 (24666163-24666488)
	1-315, gnl\|canFam2\|chr6 (21012481-21013063)
	1-315, gnl\|echTel1\|scaffold_85062 (9163-8561)
	1-315, gnl\|hg17\|chr16 (29880706-29881304)
	1-315, gnl\|Hg17\|chr16 (29880930-29881245)
	1-315, gnl\|loxAfr1\|scaffold_17012 (5666-5040)
	1-315, gnl\|mm7\|chr7 (122995018-122994421)
	1-315, gnl\|Mm7\|chr7 (122994806-122994467)
	1-315, gnl\|panTro1\|chr18 (30641694-30642293)
	1-315, gnl\|rheMac2\|chr20 (27929633-27930231)
	1-315, gnl\|rn3\|chr1 (186228054-186227461)