Non-Coding RNA Search

Pig1-13O01

Sequence:


               
               GGGGGCCCTTTCCTCCTGGATGTACCTGACCGTGCGTCGTCGTGGTCGCAAGCTGAGAGA
AACAGAGATGCGGGCGCCGGCTGGATTTGGGTTTGGTGGGAGGTGCAGGCACGAGGAGAA
ACACGGGGGATCTGGAAGAGTCCCCATCCCAGGGGGACAGGAACGAAGCCAGCTCCCACC
CCCTCCCAGCCTTCTCATTTCTGCTTTCTTATTGGACCCATCTTTATATATAACATTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGCCCTTTCCTCCTGGATGTACCTGACCGTGCGTCGTCGTGGTCGCAAGCTGAGAGA
AACAGAGATGCGGGCGCCGGCTGGATTTGGGTTTGGTGGGAGGTGCAGGCACGAGGAGAA
ACACGGGGGATCTGGAAGAGTCCCCATCCCAGGGGGACAGGAACGAAGCCAGCTCCCACC
CCCTCCCAGCCTTCTCATTTCTGCTTTCTTATTGGACCCATCTTTATATATAACATTAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               82-240, - strand, RNAz p=0.96088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-240, - strand, RNAz p=0.96088

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               4-240, gnl|bosTau2|chr19 (29408566-29408792)
               

               
               4-240, gnl|canFam2|chr9 (29342004-29342222)
               

               
               4-240, gnl|dasNov1|scaffold_30576 (18257-18433)
               

               
               4-240, gnl|echTel1|scaffold_292762 (6814-6612)
               

               
               4-240, gnl|hg17|chr17 (45422368-45422579)
               

               
               4-240, gnl|Hg17|chr17 (45422603-45422385)
               

               
               4-240, gnl|mm7|chr11 (95234337-95234105)
               

               
               4-240, gnl|Mm7|chr11 (95234079-95234302)
               

               
               4-240, gnl|monDom2|scaffold_18 (43479992-43479745)
               

               
               4-240, gnl|oryCun1|scaffold_175406 (45663-45895)
               

               
               4-240, gnl|panTro1|chr19_random (31031252-31031463)
               

               
               4-240, gnl|rheMac2|chr16 (34234123-34234338)
               

               
               4-240, gnl|rn3|chr10 (83821959-83821724)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-240, gnl|bosTau2|chr19 (29408566-29408792)
               

               
               4-240, gnl|canFam2|chr9 (29342004-29342222)
               

               
               4-240, gnl|dasNov1|scaffold_30576 (18257-18433)
               

               
               4-240, gnl|echTel1|scaffold_292762 (6814-6612)
               

               
               4-240, gnl|hg17|chr17 (45422368-45422579)
               

               
               4-240, gnl|Hg17|chr17 (45422603-45422385)
               

               
               4-240, gnl|mm7|chr11 (95234337-95234105)
               

               
               4-240, gnl|Mm7|chr11 (95234079-95234302)
               

               
               4-240, gnl|monDom2|scaffold_18 (43479992-43479745)
               

               
               4-240, gnl|oryCun1|scaffold_175406 (45663-45895)
               

               
               4-240, gnl|panTro1|chr19_random (31031252-31031463)
               

               
               4-240, gnl|rheMac2|chr16 (34234123-34234338)
               

               
               4-240, gnl|rn3|chr10 (83821959-83821724)

	4-240, gnl\|bosTau2\|chr19 (29408566-29408792)
	4-240, gnl\|canFam2\|chr9 (29342004-29342222)
	4-240, gnl\|dasNov1\|scaffold_30576 (18257-18433)
	4-240, gnl\|echTel1\|scaffold_292762 (6814-6612)
	4-240, gnl\|hg17\|chr17 (45422368-45422579)
	4-240, gnl\|Hg17\|chr17 (45422603-45422385)
	4-240, gnl\|mm7\|chr11 (95234337-95234105)
	4-240, gnl\|Mm7\|chr11 (95234079-95234302)
	4-240, gnl\|monDom2\|scaffold_18 (43479992-43479745)
	4-240, gnl\|oryCun1\|scaffold_175406 (45663-45895)
	4-240, gnl\|panTro1\|chr19_random (31031252-31031463)
	4-240, gnl\|rheMac2\|chr16 (34234123-34234338)
	4-240, gnl\|rn3\|chr10 (83821959-83821724)