Non-Coding RNA Search

Pig1-14H14

Sequence:


               
               GATTTAGAGCAATGACCCAGCAAATCAAAATCAGCCTGTGAGGGCAGATTTTCTAACTGA
ATGCCATGATTACAGAAGAAACCACAGACCGGCCACATGTCTCAGCATGACTCCCAGAGA
TGAAATTCTGCTTAACAACAGAGGCATTTTGTCTTTGTTTACCGACAGTGGAATGTCTTT
GGCAGGACTTTAGTGATTCCACTTCAGCAGCATTTTGACAAGCAAGTTTAGCAGTGGATG
AGACCAACAATAGCAAATCAACAGTGAAAAGTTCACCCACAAGTCAAGACCAAACATTTC
ATTTGAATATTTGACTTGGCAGCACATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTAGAGCAATGACCCAGCAAATCAAAATCAGCCTGTGAGGGCAGATTTTCTAACTGA
ATGCCATGATTACAGAAGAAACCACAGACCGGCCACATGTCTCAGCATGACTCCCAGAGA
TGAAATTCTGCTTAACAACAGAGGCATTTTGTCTTTGTTTACCGACAGTGGAATGTCTTT
GGCAGGACTTTAGTGATTCCACTTCAGCAGCATTTTGACAAGCAAGTTTAGCAGTGGATG
AGACCAACAATAGCAAATCAACAGTGAAAAGTTCACCCACAAGTCAAGACCAAACATTTC
ATTTGAATATTTGACTTGGCAGCACATGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-330, - strand, RNAz p=0.835987
               

               
               193-309, - strand, RNAz p=0.937941

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-330, - strand, RNAz p=0.835987
               

               
               193-309, - strand, RNAz p=0.937941

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               2-330, gnl|bosTau2|chr1 (64014375-64014702)
               

               
               2-330, gnl|canFam2|chr34 (36755614-36755948)
               

               
               2-330, gnl|dasNov1|scaffold_68313 (6845-7176)
               

               
               2-330, gnl|echTel1|scaffold_309328 (112800-112465)
               

               
               2-330, gnl|hg17|chr3 (170286271-170286606)
               

               
               2-330, gnl|Hg17|chr3 (170286648-170286319)
               

               
               2-330, gnl|mm7|chr3 (29755845-29756170)
               

               
               2-330, gnl|Mm7|chr3 (29756209-29755896)
               

               
               2-330, gnl|monDom2|scaffold_52 (3174424-3174085)
               

               
               2-330, gnl|oryCun1|scaffold_205215 (7220-6890)
               

               
               2-330, gnl|panTro1|chr2 (173763822-173764157)
               

               
               2-330, gnl|rheMac2|chr2 (117943634-117943299)
               

               
               2-330, gnl|rn3|chr2 (114761448-114761770)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-330, gnl|bosTau2|chr1 (64014375-64014702)
               

               
               2-330, gnl|canFam2|chr34 (36755614-36755948)
               

               
               2-330, gnl|dasNov1|scaffold_68313 (6845-7176)
               

               
               2-330, gnl|echTel1|scaffold_309328 (112800-112465)
               

               
               2-330, gnl|hg17|chr3 (170286271-170286606)
               

               
               2-330, gnl|Hg17|chr3 (170286648-170286319)
               

               
               2-330, gnl|mm7|chr3 (29755845-29756170)
               

               
               2-330, gnl|Mm7|chr3 (29756209-29755896)
               

               
               2-330, gnl|monDom2|scaffold_52 (3174424-3174085)
               

               
               2-330, gnl|oryCun1|scaffold_205215 (7220-6890)
               

               
               2-330, gnl|panTro1|chr2 (173763822-173764157)
               

               
               2-330, gnl|rheMac2|chr2 (117943634-117943299)
               

               
               2-330, gnl|rn3|chr2 (114761448-114761770)

	80-330, - strand, RNAz p=0.835987
	193-309, - strand, RNAz p=0.937941

	2-330, gnl\|bosTau2\|chr1 (64014375-64014702)
	2-330, gnl\|canFam2\|chr34 (36755614-36755948)
	2-330, gnl\|dasNov1\|scaffold_68313 (6845-7176)
	2-330, gnl\|echTel1\|scaffold_309328 (112800-112465)
	2-330, gnl\|hg17\|chr3 (170286271-170286606)
	2-330, gnl\|Hg17\|chr3 (170286648-170286319)
	2-330, gnl\|mm7\|chr3 (29755845-29756170)
	2-330, gnl\|Mm7\|chr3 (29756209-29755896)
	2-330, gnl\|monDom2\|scaffold_52 (3174424-3174085)
	2-330, gnl\|oryCun1\|scaffold_205215 (7220-6890)
	2-330, gnl\|panTro1\|chr2 (173763822-173764157)
	2-330, gnl\|rheMac2\|chr2 (117943634-117943299)
	2-330, gnl\|rn3\|chr2 (114761448-114761770)