Non-Coding RNA Search

Pig1-15E03

Sequence:


               
               GCAGAGCGTGTGCTCCCTCTGACAAGGATATGCGTTGTGAAATGTATTGCTGTGGAAACA
ACAGTTCTGCAGGAGGACAAGTCAACCTGAAATAAAGGAAATAACAGGAATTGCGAAATA
AGTCCTGTGGAATGAGTAAGGATCTTCCCACATGTCTATGCTTGAAGTAGGGCATGATTA
AGCCGAAATGAAATGTCATTCTAATCACACAATAAATATTACAGTCTGTaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGCGTGTGCTCCCTCTGACAAGGATATGCGTTGTGAAATGTATTGCTGTGGAAACA
ACAGTTCTGCAGGAGGACAAGTCAACCTGAAATAAAGGAAATAACAGGAATTGCGAAATA
AGTCCTGTGGAATGAGTAAGGATCTTCCCACATGTCTATGCTTGAAGTAGGGCATGATTA
AGCCGAAATGAAATGTCATTCTAATCACACAATAAATATTACAGTCTGTaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               119-229, - strand, RNAz p=0.505506

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-229, - strand, RNAz p=0.505506

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-229, gnl|bosTau2|chrX (3250284-3250054)
               

               
               2-229, gnl|canFam2|chr5 (78367859-78367538)
               

               
               2-229, gnl|dasNov1|scaffold_57750 (509-173)
               

               
               2-229, gnl|echTel1|scaffold_320224 (66540-66212)
               

               
               2-229, gnl|hg17|chr16 (73969407-73969734)
               

               
               2-229, gnl|Hg17|chr16 (73969531-73969760)
               

               
               2-229, gnl|loxAfr1|scaffold_57611 (335-4)
               

               
               2-229, gnl|mm7|chr8 (110420148-110420455)
               

               
               2-229, gnl|monDom2|scaffold_23 (174504-174821)
               

               
               2-229, gnl|oryCun1|scaffold_45126 (1297-1594)
               

               
               2-229, gnl|panTro1|chr18 (68369020-68369349)
               

               
               2-229, gnl|rheMac2|chr20 (73490946-73491275)
               

               
               2-229, gnl|rn3|chr19 (41763573-41763891)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-229, gnl|bosTau2|chrX (3250284-3250054)
               

               
               2-229, gnl|canFam2|chr5 (78367859-78367538)
               

               
               2-229, gnl|dasNov1|scaffold_57750 (509-173)
               

               
               2-229, gnl|echTel1|scaffold_320224 (66540-66212)
               

               
               2-229, gnl|hg17|chr16 (73969407-73969734)
               

               
               2-229, gnl|Hg17|chr16 (73969531-73969760)
               

               
               2-229, gnl|loxAfr1|scaffold_57611 (335-4)
               

               
               2-229, gnl|mm7|chr8 (110420148-110420455)
               

               
               2-229, gnl|monDom2|scaffold_23 (174504-174821)
               

               
               2-229, gnl|oryCun1|scaffold_45126 (1297-1594)
               

               
               2-229, gnl|panTro1|chr18 (68369020-68369349)
               

               
               2-229, gnl|rheMac2|chr20 (73490946-73491275)
               

               
               2-229, gnl|rn3|chr19 (41763573-41763891)

	2-229, gnl\|bosTau2\|chrX (3250284-3250054)
	2-229, gnl\|canFam2\|chr5 (78367859-78367538)
	2-229, gnl\|dasNov1\|scaffold_57750 (509-173)
	2-229, gnl\|echTel1\|scaffold_320224 (66540-66212)
	2-229, gnl\|hg17\|chr16 (73969407-73969734)
	2-229, gnl\|Hg17\|chr16 (73969531-73969760)
	2-229, gnl\|loxAfr1\|scaffold_57611 (335-4)
	2-229, gnl\|mm7\|chr8 (110420148-110420455)
	2-229, gnl\|monDom2\|scaffold_23 (174504-174821)
	2-229, gnl\|oryCun1\|scaffold_45126 (1297-1594)
	2-229, gnl\|panTro1\|chr18 (68369020-68369349)
	2-229, gnl\|rheMac2\|chr20 (73490946-73491275)
	2-229, gnl\|rn3\|chr19 (41763573-41763891)