Non-Coding RNA Search

Pig1-15I07

Sequence:


               
               GCGCCGCAGCATGCGCCTCTGCCGCCGCAAGTCCCACCTCAGCCAGCTGCGCGCCAAAGT
GAGCGGTGCCAGCAACTGCTATGGCGCAGTGGGCGCCCCTTACGAAGAGGTGGTGAGGTA
CCAGCGCCACCCTGCAAACAAGCACCGCCTCATCGTGCTCGTGGGACCTTCCGGTGTTGG
AGTAAATGAACTGAGAAGGCAACTTATTGAACTTAATCCTAACCGTTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGCAGCATGCGCCTCTGCCGCCGCAAGTCCCACCTCAGCCAGCTGCGCGCCAAAGT
GAGCGGTGCCAGCAACTGCTATGGCGCAGTGGGCGCCCCTTACGAAGAGGTGGTGAGGTA
CCAGCGCCACCCTGCAAACAAGCACCGCCTCATCGTGCTCGTGGGACCTTCCGGTGTTGG
AGTAAATGAACTGAGAAGGCAACTTATTGAACTTAATCCTAACCGTTTTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               54-165, - strand, RNAz p=0.802063

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-165, - strand, RNAz p=0.802063

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               2-165, gnl|bosTau2|chr2 (52798169-52798332)
               

               
               2-165, gnl|canFam2|chr37 (13719879-13720061)
               

               
               2-165, gnl|danRer3|chr9 (16334150-16333969)
               

               
               2-165, gnl|dasNov1|scaffold_33684 (3729-3556)
               

               
               2-165, gnl|echTel1|scaffold_290645 (99720-99899)
               

               
               2-165, gnl|fr1|chrUn (88860353-88860174)
               

               
               2-165, gnl|galGal2|chr7 (12414849-12415025)
               

               
               2-165, gnl|hg17|chr2 (202346422-202346601)
               

               
               2-165, gnl|Hg17|chr2 (202346589-202346426)
               

               
               2-165, gnl|loxAfr1|scaffold_2421 (101235-101057)
               

               
               2-165, gnl|mm7|chr1 (59381078-59381257)
               

               
               2-165, gnl|Mm7|chr1 (59381245-59381082)
               

               
               2-165, gnl|monDom2|scaffold_64 (10020680-10020856)
               

               
               2-165, gnl|oryCun1|scaffold_93247 (15078-15257)
               

               
               2-165, gnl|panTro1|chr13 (92332552-92332731)
               

               
               2-165, gnl|rheMac2|chr12 (65453459-65453638)
               

               
               2-165, gnl|rn3|chr9 (57854982-57855161)
               

               
               2-165, gnl|tetNig1|chr3 (277646-277470)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-165, gnl|bosTau2|chr2 (52798169-52798332)
               

               
               2-165, gnl|canFam2|chr37 (13719879-13720061)
               

               
               2-165, gnl|danRer3|chr9 (16334150-16333969)
               

               
               2-165, gnl|dasNov1|scaffold_33684 (3729-3556)
               

               
               2-165, gnl|echTel1|scaffold_290645 (99720-99899)
               

               
               2-165, gnl|fr1|chrUn (88860353-88860174)
               

               
               2-165, gnl|galGal2|chr7 (12414849-12415025)
               

               
               2-165, gnl|hg17|chr2 (202346422-202346601)
               

               
               2-165, gnl|Hg17|chr2 (202346589-202346426)
               

               
               2-165, gnl|loxAfr1|scaffold_2421 (101235-101057)
               

               
               2-165, gnl|mm7|chr1 (59381078-59381257)
               

               
               2-165, gnl|Mm7|chr1 (59381245-59381082)
               

               
               2-165, gnl|monDom2|scaffold_64 (10020680-10020856)
               

               
               2-165, gnl|oryCun1|scaffold_93247 (15078-15257)
               

               
               2-165, gnl|panTro1|chr13 (92332552-92332731)
               

               
               2-165, gnl|rheMac2|chr12 (65453459-65453638)
               

               
               2-165, gnl|rn3|chr9 (57854982-57855161)
               

               
               2-165, gnl|tetNig1|chr3 (277646-277470)

	2-165, gnl\|bosTau2\|chr2 (52798169-52798332)
	2-165, gnl\|canFam2\|chr37 (13719879-13720061)
	2-165, gnl\|danRer3\|chr9 (16334150-16333969)
	2-165, gnl\|dasNov1\|scaffold_33684 (3729-3556)
	2-165, gnl\|echTel1\|scaffold_290645 (99720-99899)
	2-165, gnl\|fr1\|chrUn (88860353-88860174)
	2-165, gnl\|galGal2\|chr7 (12414849-12415025)
	2-165, gnl\|hg17\|chr2 (202346422-202346601)
	2-165, gnl\|Hg17\|chr2 (202346589-202346426)
	2-165, gnl\|loxAfr1\|scaffold_2421 (101235-101057)
	2-165, gnl\|mm7\|chr1 (59381078-59381257)
	2-165, gnl\|Mm7\|chr1 (59381245-59381082)
	2-165, gnl\|monDom2\|scaffold_64 (10020680-10020856)
	2-165, gnl\|oryCun1\|scaffold_93247 (15078-15257)
	2-165, gnl\|panTro1\|chr13 (92332552-92332731)
	2-165, gnl\|rheMac2\|chr12 (65453459-65453638)
	2-165, gnl\|rn3\|chr9 (57854982-57855161)
	2-165, gnl\|tetNig1\|chr3 (277646-277470)