Non-Coding RNA Search

Pig1-18C10

Sequence:


               
               GAAACAAGTTCTAAGGTGCACTTTCCTCGTTGCGGTATTTGTCGCTCTCTTTGTTGCTTA
TGCCGATAAGCATGGGTTTCCTTGGTGCAGTGTGAGTTTTTATATATGTATAAATCTATA
TATAAACTATACATATATATACAAGCCAGTGTATAATGTTATAAAATGGAATTCTAAGTT
ATTAATTGTAACCTGTAGGTGACCTCGGTATTAACGTGAAAAATACTGAAAAACAAGCAA
AAAACCGGACAAAATGGAAAAAAATTAGACTATGCCCTCATTGTACTTATCAGGTTTTAT
AGATTAAATATATTGTAAACTCGGGACGAATCCTGCCCACCCGCCCCTCTTGCCTGCGGC
GGGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACAAGTTCTAAGGTGCACTTTCCTCGTTGCGGTATTTGTCGCTCTCTTTGTTGCTTA
TGCCGATAAGCATGGGTTTCCTTGGTGCAGTGTGAGTTTTTATATATGTATAAATCTATA
TATAAACTATACATATATATACAAGCCAGTGTATAATGTTATAAAATGGAATTCTAAGTT
ATTAATTGTAACCTGTAGGTGACCTCGGTATTAACGTGAAAAATACTGAAAAACAAGCAA
AAAACCGGACAAAATGGAAAAAAATTAGACTATGCCCTCATTGTACTTATCAGGTTTTAT
AGATTAAATATATTGTAAACTCGGGACGAATCCTGCCCACCCGCCCCTCTTGCCTGCGGC
GGGTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-152, + strand, RNAz p=0.983425

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-152, + strand, RNAz p=0.983425

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               35-100, BB292639 RIKEN full-length enriched, 9.5 days embryo parthenogenote 
(dbj|BB292639.2|), blast E-value=6e-28, identity=100% 
               

               
               35-100, AF070940 Rattus norvegicus ocular lens epithelium Sprague Dawley 
(gb|AF070940.1|), blast E-value=1e-25, identity=98.48% 
               

               
               41-100, mv45h10.y1 Soares mouse 3NME12 5 Mus musculus cDNA clone 
(gb|AI390378.1|), blast E-value=2e-24, identity=100% 
               

               
               35-100, us22g04.y1 Soares_NMGBC_B-cell Mus musculus cDNA clone (gb|AW825809.1|), 
blast E-value=6e-28, identity=100% 
               

               
               35-100, us22g04.x1 Soares_NMGBC_B-cell Mus musculus cDNA clone (gb|AW826168.1|), 
blast E-value=6e-28, identity=100% 
               

               
               35-100, 734166 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB468351.1|), 
blast E-value=6e-28, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               35-100, BB292639 RIKEN full-length enriched, 9.5 days embryo parthenogenote 
(dbj|BB292639.2|), blast E-value=6e-28, identity=100% 
               

               
               35-100, AF070940 Rattus norvegicus ocular lens epithelium Sprague Dawley 
(gb|AF070940.1|), blast E-value=1e-25, identity=98.48% 
               

               
               41-100, mv45h10.y1 Soares mouse 3NME12 5 Mus musculus cDNA clone 
(gb|AI390378.1|), blast E-value=2e-24, identity=100% 
               

               
               35-100, us22g04.y1 Soares_NMGBC_B-cell Mus musculus cDNA clone (gb|AW825809.1|), 
blast E-value=6e-28, identity=100% 
               

               
               35-100, us22g04.x1 Soares_NMGBC_B-cell Mus musculus cDNA clone (gb|AW826168.1|), 
blast E-value=6e-28, identity=100% 
               

               
               35-100, 734166 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB468351.1|), 
blast E-value=6e-28, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-366, gnl|bosTau2|chr3 (65933186-65932822)
               

               
               2-366, gnl|Hg17|chr1 (50595826-50595460)
               

               
               2-366, gnl|Mm7|chr4 (109359594-109359963)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-366, gnl|bosTau2|chr3 (65933186-65932822)
               

               
               2-366, gnl|Hg17|chr1 (50595826-50595460)
               

               
               2-366, gnl|Mm7|chr4 (109359594-109359963)

	35-100, BB292639 RIKEN full-length enriched, 9.5 days embryo parthenogenote (dbj\|BB292639.2\|), blast E-value=6e-28, identity=100%
	35-100, AF070940 Rattus norvegicus ocular lens epithelium Sprague Dawley (gb\|AF070940.1\|), blast E-value=1e-25, identity=98.48%
	41-100, mv45h10.y1 Soares mouse 3NME12 5 Mus musculus cDNA clone (gb\|AI390378.1\|), blast E-value=2e-24, identity=100%
	35-100, us22g04.y1 Soares_NMGBC_B-cell Mus musculus cDNA clone (gb\|AW825809.1\|), blast E-value=6e-28, identity=100%
	35-100, us22g04.x1 Soares_NMGBC_B-cell Mus musculus cDNA clone (gb\|AW826168.1\|), blast E-value=6e-28, identity=100%
	35-100, 734166 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB468351.1\|), blast E-value=6e-28, identity=100%

	2-366, gnl\|bosTau2\|chr3 (65933186-65932822)
	2-366, gnl\|Hg17\|chr1 (50595826-50595460)
	2-366, gnl\|Mm7\|chr4 (109359594-109359963)