Non-Coding RNA Search

Pig1-18O21

Sequence:


               
               GCGGAGAAACCAGTGGGGGGGGGGGGCTCCCCTGCCTCATTCTTTCATTTCCTTTGACCT
GATGGTGATTCAGAACTATCTGTACGCCCTCAACAGCAAGCGCATGTTCTGCTTTGATCC
CAGCCACAACATGTGGCTGAAGTGTGTGTCTCTGAAGCGCAACGACTTCCAGGAGGCGTG
TGTCTTCAATGATGAGATTTACTGCATCTGCGACATCCCAGTCATGAAGGTGTATAACCC
GGTGAGAGGGGAGTGGCGGCAGATTAATAACATTCCCCTGGTGTCGGAGACCAACAACTA
CCGGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAGAAACCAGTGGGGGGGGGGGGCTCCCCTGCCTCATTCTTTCATTTCCTTTGACCT
GATGGTGATTCAGAACTATCTGTACGCCCTCAACAGCAAGCGCATGTTCTGCTTTGATCC
CAGCCACAACATGTGGCTGAAGTGTGTGTCTCTGAAGCGCAACGACTTCCAGGAGGCGTG
TGTCTTCAATGATGAGATTTACTGCATCTGCGACATCCCAGTCATGAAGGTGTATAACCC
GGTGAGAGGGGAGTGGCGGCAGATTAATAACATTCCCCTGGTGTCGGAGACCAACAACTA
CCGGATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               43-202, + strand, RNAz p=0.838066

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-202, + strand, RNAz p=0.838066

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               4-307, gnl|bosTau2|chr12 (3031026-3030723)
               

               
               4-307, gnl|canFam2|chr22 (12415932-12415366)
               

               
               4-307, gnl|danRer3|chrUn (179810163-179809609)
               

               
               4-307, gnl|dasNov1|scaffold_20967 (8984-8418)
               

               
               4-307, gnl|echTel1|scaffold_281765 (47319-46753)
               

               
               4-307, gnl|fr1|chrUn (264441629-264441075)
               

               
               4-307, gnl|hg17|chr13 (40602650-40603216)
               

               
               4-307, gnl|Hg17|chr13 (40603268-40602965)
               

               
               4-307, gnl|loxAfr1|scaffold_35612 (4698-5264)
               

               
               4-307, gnl|mm7|chr14 (74134712-74134196)
               

               
               4-307, gnl|Mm7|chr14 (74108828-74109131)
               

               
               4-307, gnl|monDom2|scaffold_64 (2840589-2841155)
               

               
               4-307, gnl|oryCun1|scaffold_171185 (11549-12107)
               

               
               4-307, gnl|panTro1|chr14 (40309899-40310465)
               

               
               4-307, gnl|rheMac2|chr17 (20137961-20138527)
               

               
               4-307, gnl|rn3|chr15 (61519434-61518911)
               

               
               4-307, gnl|tetNig1|chr2 (8244966-8244412)
               

               
               4-307, gnl|xenTro1|scaffold_381 (313611-314174)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-307, gnl|bosTau2|chr12 (3031026-3030723)
               

               
               4-307, gnl|canFam2|chr22 (12415932-12415366)
               

               
               4-307, gnl|danRer3|chrUn (179810163-179809609)
               

               
               4-307, gnl|dasNov1|scaffold_20967 (8984-8418)
               

               
               4-307, gnl|echTel1|scaffold_281765 (47319-46753)
               

               
               4-307, gnl|fr1|chrUn (264441629-264441075)
               

               
               4-307, gnl|hg17|chr13 (40602650-40603216)
               

               
               4-307, gnl|Hg17|chr13 (40603268-40602965)
               

               
               4-307, gnl|loxAfr1|scaffold_35612 (4698-5264)
               

               
               4-307, gnl|mm7|chr14 (74134712-74134196)
               

               
               4-307, gnl|Mm7|chr14 (74108828-74109131)
               

               
               4-307, gnl|monDom2|scaffold_64 (2840589-2841155)
               

               
               4-307, gnl|oryCun1|scaffold_171185 (11549-12107)
               

               
               4-307, gnl|panTro1|chr14 (40309899-40310465)
               

               
               4-307, gnl|rheMac2|chr17 (20137961-20138527)
               

               
               4-307, gnl|rn3|chr15 (61519434-61518911)
               

               
               4-307, gnl|tetNig1|chr2 (8244966-8244412)
               

               
               4-307, gnl|xenTro1|scaffold_381 (313611-314174)

	4-307, gnl\|bosTau2\|chr12 (3031026-3030723)
	4-307, gnl\|canFam2\|chr22 (12415932-12415366)
	4-307, gnl\|danRer3\|chrUn (179810163-179809609)
	4-307, gnl\|dasNov1\|scaffold_20967 (8984-8418)
	4-307, gnl\|echTel1\|scaffold_281765 (47319-46753)
	4-307, gnl\|fr1\|chrUn (264441629-264441075)
	4-307, gnl\|hg17\|chr13 (40602650-40603216)
	4-307, gnl\|Hg17\|chr13 (40603268-40602965)
	4-307, gnl\|loxAfr1\|scaffold_35612 (4698-5264)
	4-307, gnl\|mm7\|chr14 (74134712-74134196)
	4-307, gnl\|Mm7\|chr14 (74108828-74109131)
	4-307, gnl\|monDom2\|scaffold_64 (2840589-2841155)
	4-307, gnl\|oryCun1\|scaffold_171185 (11549-12107)
	4-307, gnl\|panTro1\|chr14 (40309899-40310465)
	4-307, gnl\|rheMac2\|chr17 (20137961-20138527)
	4-307, gnl\|rn3\|chr15 (61519434-61518911)
	4-307, gnl\|tetNig1\|chr2 (8244966-8244412)
	4-307, gnl\|xenTro1\|scaffold_381 (313611-314174)