Non-Coding RNA Search

Pig1-19E04

Sequence:


               
               GCACCAAGTCAGGTAGGAACGTGGGCTGCGTGGCCCGAACCATTGTCTTGCTCCTTCCAA
GTTTGACCACGTGGTCCTTAGATCGTGGGCCACGGAGGGTTTGGAGAAATTGGGTGGGCG
CTGGCCCGGTCTGTGTCCTTGACCCAGACCCTGCCGGCCTCCCCCACGGGCAGGGTGCTC
TAGAGGGCGCTGGAGGTCCCCAGGGCACCCTCGGAGGGGGGGAGCCGGAGGGCCACGTGT
CCCCAGCTCCTGGAGGCTGTTCCACCTCCCAGGGGGACCAGAGAAACCTATTGTGCTTGG
AGATGGGCGACCCATTTGCGTCGGGAAGGCTGGCCTCGTGGGCGTCCAGCTAGAAACATC
T

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCAAGTCAGGTAGGAACGTGGGCTGCGTGGCCCGAACCATTGTCTTGCTCCTTCCAA
GTTTGACCACGTGGTCCTTAGATCGTGGGCCACGGAGGGTTTGGAGAAATTGGGTGGGCG
CTGGCCCGGTCTGTGTCCTTGACCCAGACCCTGCCGGCCTCCCCCACGGGCAGGGTGCTC
TAGAGGGCGCTGGAGGTCCCCAGGGCACCCTCGGAGGGGGGGAGCCGGAGGGCCACGTGT
CCCCAGCTCCTGGAGGCTGTTCCACCTCCCAGGGGGACCAGAGAAACCTATTGTGCTTGG
AGATGGGCGACCCATTTGCGTCGGGAAGGCTGGCCTCGTGGGCGTCCAGCTAGAAACATC
T

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-226, + strand, RNAz p=0.986661

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-226, + strand, RNAz p=0.986661

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               164-248, + strand, RNAmicro p=0.999362
               

               
               155-335, - strand, RNAmicro p=0.98025

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               164-248, + strand, RNAmicro p=0.999362
               

               
               155-335, - strand, RNAmicro p=0.98025

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-361, gnl|bosTau2|chr19 (45062384-45062741)
               

               
               4-361, gnl|Hg17|chr17 (76990315-76990684)
               

               
               4-361, gnl|Mm7|chr11 (120348197-120348496)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-361, gnl|bosTau2|chr19 (45062384-45062741)
               

               
               4-361, gnl|Hg17|chr17 (76990315-76990684)
               

               
               4-361, gnl|Mm7|chr11 (120348197-120348496)

	164-248, + strand, RNAmicro p=0.999362
	155-335, - strand, RNAmicro p=0.98025

	4-361, gnl\|bosTau2\|chr19 (45062384-45062741)
	4-361, gnl\|Hg17\|chr17 (76990315-76990684)
	4-361, gnl\|Mm7\|chr11 (120348197-120348496)