Non-Coding RNA Search

Pig1-19I11

Sequence:


               
               GGTCAATTTAAAAATGTTTCTAGGCAATTCACTAGAAACATTAACCAATAGGATTTTGGT
GAGCTTAGCTTCTGTGTTCTTACTGCCGCCCAGAAAAGGGGCAGGGCTCTGCAGCCCCCG
GGACAGATGAGCACCCCATGCCTATACCTCCCTCCCTGCAGCTAAGTCCCAGAGCATCCG
GGCCCTACCTGGAGACTGGGCTGTAACTCTGTAGGCTCAGAGAGCCTGGGGAGGGTGCTA
ACCCCTCACCTCTAGTATTTCGGGAGATAGGGAAAGTGAACAGACTTCCCCTTCCAAACC
CCTCAGGATGGTTCCCTACCAGCCAGGCTTACTACTTCTAGAAGAGAGCAGGGAGTGAGG
CTGCACTCCCCGGCTTTAGGAGTGTGGGCTGTGAGATTTATGCAGTATTGTGCTATCGGC
ACAAGGAAAGCCAGGAGAGACTCTGCCTCCAGGATTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCAATTTAAAAATGTTTCTAGGCAATTCACTAGAAACATTAACCAATAGGATTTTGGT
GAGCTTAGCTTCTGTGTTCTTACTGCCGCCCAGAAAAGGGGCAGGGCTCTGCAGCCCCCG
GGACAGATGAGCACCCCATGCCTATACCTCCCTCCCTGCAGCTAAGTCCCAGAGCATCCG
GGCCCTACCTGGAGACTGGGCTGTAACTCTGTAGGCTCAGAGAGCCTGGGGAGGGTGCTA
ACCCCTCACCTCTAGTATTTCGGGAGATAGGGAAAGTGAACAGACTTCCCCTTCCAAACC
CCTCAGGATGGTTCCCTACCAGCCAGGCTTACTACTTCTAGAAGAGAGCAGGGAGTGAGG
CTGCACTCCCCGGCTTTAGGAGTGTGGGCTGTGAGATTTATGCAGTATTGTGCTATCGGC
ACAAGGAAAGCCAGGAGAGACTCTGCCTCCAGGATTCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-351, + strand, RNAz p=0.979219
               

               
               224-319, - strand, RNAz p=0.697149

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-351, + strand, RNAz p=0.979219
               

               
               224-319, - strand, RNAz p=0.697149

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR624498, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR624498, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-459, gnl|bosTau2|chr2 (85964229-85963779)
               

               
               2-459, gnl|canFam2|chr2 (84224200-84223298)
               

               
               2-459, gnl|dasNov1|scaffold_14227 (30762-31663)
               

               
               2-459, gnl|echTel1|scaffold_289908 (40212-41119)
               

               
               2-459, gnl|galGal2|chr21 (4223509-4224420)
               

               
               2-459, gnl|hg17|chr1 (16467307-16468232)
               

               
               2-459, gnl|Hg17|chr1 (16467524-16467984)
               

               
               2-459, gnl|loxAfr1|scaffold_33540 (21178-20267)
               

               
               2-459, gnl|mm7|chr4 (140493839-140493001)
               

               
               2-459, gnl|Mm7|chr4 (140493625-140493210)
               

               
               2-459, gnl|monDom2|scaffold_109 (2566607-2565682)
               

               
               2-459, gnl|oryCun1|scaffold_184004 (5944-5091)
               

               
               2-459, gnl|panTro1|chr1 (16629602-16630529)
               

               
               2-459, gnl|rheMac2|chr1 (19190564-19191487)
               

               
               2-459, gnl|rn3|chr5 (159985679-159984808)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-459, gnl|bosTau2|chr2 (85964229-85963779)
               

               
               2-459, gnl|canFam2|chr2 (84224200-84223298)
               

               
               2-459, gnl|dasNov1|scaffold_14227 (30762-31663)
               

               
               2-459, gnl|echTel1|scaffold_289908 (40212-41119)
               

               
               2-459, gnl|galGal2|chr21 (4223509-4224420)
               

               
               2-459, gnl|hg17|chr1 (16467307-16468232)
               

               
               2-459, gnl|Hg17|chr1 (16467524-16467984)
               

               
               2-459, gnl|loxAfr1|scaffold_33540 (21178-20267)
               

               
               2-459, gnl|mm7|chr4 (140493839-140493001)
               

               
               2-459, gnl|Mm7|chr4 (140493625-140493210)
               

               
               2-459, gnl|monDom2|scaffold_109 (2566607-2565682)
               

               
               2-459, gnl|oryCun1|scaffold_184004 (5944-5091)
               

               
               2-459, gnl|panTro1|chr1 (16629602-16630529)
               

               
               2-459, gnl|rheMac2|chr1 (19190564-19191487)
               

               
               2-459, gnl|rn3|chr5 (159985679-159984808)

	2-351, + strand, RNAz p=0.979219
	224-319, - strand, RNAz p=0.697149

	2-459, gnl\|bosTau2\|chr2 (85964229-85963779)
	2-459, gnl\|canFam2\|chr2 (84224200-84223298)
	2-459, gnl\|dasNov1\|scaffold_14227 (30762-31663)
	2-459, gnl\|echTel1\|scaffold_289908 (40212-41119)
	2-459, gnl\|galGal2\|chr21 (4223509-4224420)
	2-459, gnl\|hg17\|chr1 (16467307-16468232)
	2-459, gnl\|Hg17\|chr1 (16467524-16467984)
	2-459, gnl\|loxAfr1\|scaffold_33540 (21178-20267)
	2-459, gnl\|mm7\|chr4 (140493839-140493001)
	2-459, gnl\|Mm7\|chr4 (140493625-140493210)
	2-459, gnl\|monDom2\|scaffold_109 (2566607-2565682)
	2-459, gnl\|oryCun1\|scaffold_184004 (5944-5091)
	2-459, gnl\|panTro1\|chr1 (16629602-16630529)
	2-459, gnl\|rheMac2\|chr1 (19190564-19191487)
	2-459, gnl\|rn3\|chr5 (159985679-159984808)