Non-Coding RNA Search

Pig1-19P16

Sequence:


               
               GGTTAACCAGAACATGCAGCCACTCTATGTTCTCCAGACTCTTCCAAATGGAGTGACCCA
AAAAATCCAGTTGACCTCTTCTGTTAGTTCTGCACCCAATGTGATGGAGACAAATACTTC
AGTATTGGGGCCCATGGGCAGTGGTCTCACCCTAACCACAGGACTAAATCCAAGCTTGCC
AACTTCTCAGTCTTTGTTCCCTCCTGCTAGCAAAGGACTGCTCCCCATGCCTCATCACCA
GCACTTACATTCCTTCCCTGCGGCTACTCAGAGTAGCTTCCCGACTAACATCAGCAGCCC
TCCTTCAGGCCTACTTATCGGGGTCCAGCCTCCTCCAGATCCCCAGCTTTTGGTTTCAGA
AGCCAGCCAGAGGACAGACCTCAGTACCACAGTAGCCACTCCACCCTCTGGACTCAAGAA
AAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTAACCAGAACATGCAGCCACTCTATGTTCTCCAGACTCTTCCAAATGGAGTGACCCA
AAAAATCCAGTTGACCTCTTCTGTTAGTTCTGCACCCAATGTGATGGAGACAAATACTTC
AGTATTGGGGCCCATGGGCAGTGGTCTCACCCTAACCACAGGACTAAATCCAAGCTTGCC
AACTTCTCAGTCTTTGTTCCCTCCTGCTAGCAAAGGACTGCTCCCCATGCCTCATCACCA
GCACTTACATTCCTTCCCTGCGGCTACTCAGAGTAGCTTCCCGACTAACATCAGCAGCCC
TCCTTCAGGCCTACTTATCGGGGTCCAGCCTCCTCCAGATCCCCAGCTTTTGGTTTCAGA
AGCCAGCCAGAGGACAGACCTCAGTACCACAGTAGCCACTCCACCCTCTGGACTCAAGAA
AAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               121-360, - strand, RNAz p=0.758276
               

               
               198-304, - strand, RNAz p=0.859804

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-360, - strand, RNAz p=0.758276
               

               
               198-304, - strand, RNAz p=0.859804

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               2-424, gnl|bosTau2|chr15 (15037192-15036773)
               

               
               2-424, gnl|canFam2|chr5 (18244945-18244146)
               

               
               2-424, gnl|danRer3|chr16 (16252983-16253755)
               

               
               2-424, gnl|dasNov1|scaffold_7494 (16240-15438)
               

               
               2-424, gnl|echTel1|scaffold_266975 (7305-6500)
               

               
               2-424, gnl|fr1|chrUn (124429385-124430214)
               

               
               2-424, gnl|galGal2|chr24 (4233696-4232903)
               

               
               2-424, gnl|hg17|chr11 (117880968-117881770)
               

               
               2-424, gnl|Hg17|chr11 (117881067-117881489)
               

               
               2-424, gnl|loxAfr1|scaffold_118704 (810-4)
               

               
               2-424, gnl|mm7|chr9 (44754236-44753431)
               

               
               2-424, gnl|Mm7|chr9 (44754135-44753713)
               

               
               2-424, gnl|monDom2|scaffold_2 (120171851-120171046)
               

               
               2-424, gnl|oryCun1|scaffold_207575 (48175-48977)
               

               
               2-424, gnl|panTro1|chr9 (119890515-119891317)
               

               
               2-424, gnl|rheMac2|chr14 (116892584-116893386)
               

               
               2-424, gnl|rn3|chr8 (47784994-47784189)
               

               
               2-424, gnl|tetNig1|chr10 (10629857-10630684)
               

               
               2-424, gnl|xenTro1|scaffold_18 (437477-436672)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-424, gnl|bosTau2|chr15 (15037192-15036773)
               

               
               2-424, gnl|canFam2|chr5 (18244945-18244146)
               

               
               2-424, gnl|danRer3|chr16 (16252983-16253755)
               

               
               2-424, gnl|dasNov1|scaffold_7494 (16240-15438)
               

               
               2-424, gnl|echTel1|scaffold_266975 (7305-6500)
               

               
               2-424, gnl|fr1|chrUn (124429385-124430214)
               

               
               2-424, gnl|galGal2|chr24 (4233696-4232903)
               

               
               2-424, gnl|hg17|chr11 (117880968-117881770)
               

               
               2-424, gnl|Hg17|chr11 (117881067-117881489)
               

               
               2-424, gnl|loxAfr1|scaffold_118704 (810-4)
               

               
               2-424, gnl|mm7|chr9 (44754236-44753431)
               

               
               2-424, gnl|Mm7|chr9 (44754135-44753713)
               

               
               2-424, gnl|monDom2|scaffold_2 (120171851-120171046)
               

               
               2-424, gnl|oryCun1|scaffold_207575 (48175-48977)
               

               
               2-424, gnl|panTro1|chr9 (119890515-119891317)
               

               
               2-424, gnl|rheMac2|chr14 (116892584-116893386)
               

               
               2-424, gnl|rn3|chr8 (47784994-47784189)
               

               
               2-424, gnl|tetNig1|chr10 (10629857-10630684)
               

               
               2-424, gnl|xenTro1|scaffold_18 (437477-436672)

	121-360, - strand, RNAz p=0.758276
	198-304, - strand, RNAz p=0.859804

	2-424, gnl\|bosTau2\|chr15 (15037192-15036773)
	2-424, gnl\|canFam2\|chr5 (18244945-18244146)
	2-424, gnl\|danRer3\|chr16 (16252983-16253755)
	2-424, gnl\|dasNov1\|scaffold_7494 (16240-15438)
	2-424, gnl\|echTel1\|scaffold_266975 (7305-6500)
	2-424, gnl\|fr1\|chrUn (124429385-124430214)
	2-424, gnl\|galGal2\|chr24 (4233696-4232903)
	2-424, gnl\|hg17\|chr11 (117880968-117881770)
	2-424, gnl\|Hg17\|chr11 (117881067-117881489)
	2-424, gnl\|loxAfr1\|scaffold_118704 (810-4)
	2-424, gnl\|mm7\|chr9 (44754236-44753431)
	2-424, gnl\|Mm7\|chr9 (44754135-44753713)
	2-424, gnl\|monDom2\|scaffold_2 (120171851-120171046)
	2-424, gnl\|oryCun1\|scaffold_207575 (48175-48977)
	2-424, gnl\|panTro1\|chr9 (119890515-119891317)
	2-424, gnl\|rheMac2\|chr14 (116892584-116893386)
	2-424, gnl\|rn3\|chr8 (47784994-47784189)
	2-424, gnl\|tetNig1\|chr10 (10629857-10630684)
	2-424, gnl\|xenTro1\|scaffold_18 (437477-436672)