Non-Coding RNA Search

Pig1-20H01

Sequence:


               
               TGGTCCGGTCCGGAATTCCCGGATTCTCGCCCACCTGCGGACCGTCCTCCTAGGCGGTGC
CAGCCTTTGTGAATCATAAGTGGGTGGACGGAGGAAAGTCAAGAGGACTTACAGGCCCCG
CTCCATTCAGAGGTCGTGGTTCGGGCAGTTCCCGTGGTTAGTAATTGACCCCAAAGAGAC
CAGGCTCTTCTGCTCGGCTTGCAGAGGGGGACCTANCCTCCACGACAGATCATCCGGGTT
AGTCCGAGGCTACACGGGTCCTTTTAAAGTGGAGACTTTAAAGTACCACGGAGTCAGCAA
AGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCCGGTCCGGAATTCCCGGATTCTCGCCCACCTGCGGACCGTCCTCCTAGGCGGTGC
CAGCCTTTGTGAATCATAAGTGGGTGGACGGAGGAAAGTCAAGAGGACTTACAGGCCCCG
CTCCATTCAGAGGTCGTGGTTCGGGCAGTTCCCGTGGTTAGTAATTGACCCCAAAGAGAC
CAGGCTCTTCTGCTCGGCTTGCAGAGGGGGACCTANCCTCCACGACAGATCATCCGGGTT
AGTCCGAGGCTACACGGGTCCTTTTAAAGTGGAGACTTTAAAGTACCACGGAGTCAGCAA
AGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               200-303, + strand, RNAz p=0.749187

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-303, + strand, RNAz p=0.749187

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               46-303, gnl|bosTau2|chr4 (64992180-64992438)
               

               
               46-303, gnl|canFam2|chr16 (17583592-17584129)
               

               
               46-303, gnl|dasNov1|scaffold_35409 (9976-10505)
               

               
               46-303, gnl|hg17|chr7 (148995020-148995557)
               

               
               46-303, gnl|Hg17|chr7 (148995213-148995468)
               

               
               46-303, gnl|mm7|chr6 (48488306-48488844)
               

               
               46-303, gnl|Mm7|chr6 (48488497-48488755)
               

               
               46-303, gnl|monDom2|scaffold_7 (9873039-9873581)
               

               
               46-303, gnl|oryCun1|scaffold_215377 (50418-49878)
               

               
               46-303, gnl|panTro1|chr6 (151829386-151829923)
               

               
               46-303, gnl|rheMac2|chr3 (187160542-187161082)
               

               
               46-303, gnl|rn3|chr4 (76888267-76888803)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-303, gnl|bosTau2|chr4 (64992180-64992438)
               

               
               46-303, gnl|canFam2|chr16 (17583592-17584129)
               

               
               46-303, gnl|dasNov1|scaffold_35409 (9976-10505)
               

               
               46-303, gnl|hg17|chr7 (148995020-148995557)
               

               
               46-303, gnl|Hg17|chr7 (148995213-148995468)
               

               
               46-303, gnl|mm7|chr6 (48488306-48488844)
               

               
               46-303, gnl|Mm7|chr6 (48488497-48488755)
               

               
               46-303, gnl|monDom2|scaffold_7 (9873039-9873581)
               

               
               46-303, gnl|oryCun1|scaffold_215377 (50418-49878)
               

               
               46-303, gnl|panTro1|chr6 (151829386-151829923)
               

               
               46-303, gnl|rheMac2|chr3 (187160542-187161082)
               

               
               46-303, gnl|rn3|chr4 (76888267-76888803)

	46-303, gnl\|bosTau2\|chr4 (64992180-64992438)
	46-303, gnl\|canFam2\|chr16 (17583592-17584129)
	46-303, gnl\|dasNov1\|scaffold_35409 (9976-10505)
	46-303, gnl\|hg17\|chr7 (148995020-148995557)
	46-303, gnl\|Hg17\|chr7 (148995213-148995468)
	46-303, gnl\|mm7\|chr6 (48488306-48488844)
	46-303, gnl\|Mm7\|chr6 (48488497-48488755)
	46-303, gnl\|monDom2\|scaffold_7 (9873039-9873581)
	46-303, gnl\|oryCun1\|scaffold_215377 (50418-49878)
	46-303, gnl\|panTro1\|chr6 (151829386-151829923)
	46-303, gnl\|rheMac2\|chr3 (187160542-187161082)
	46-303, gnl\|rn3\|chr4 (76888267-76888803)