Non-Coding RNA Search

Pig1-21I13

Sequence:


               
               GCCCACGCGTCCGGTTGCTCTCTGTGAGGCACCAGTTTGCTTcccagcttggtgcagtga
gttaaggatctggtgttgctgcagctgtggcataggctgcagctgtggctcagattccag
ccctggctaaggaacttccCGATGTCACAGGTACAGGACAAAAAAACCCAAAAACCAAAA
ACCAAAACAAAACAAAAAACATACTGTAGAAACAGAAGTGAAAGAGGAAAGAAGGAAGGA
AAGTAATGTTTTCAGCCCCTTCTTCAAAGAAGATGCTGCAGTCCTGGATATTTTTTTCTG
CCCAAGGGCAGGAAGAGGACAGGCTTTCAAGGAAAGCAACAAAAAGGAGGGGACTTCTCG
AGTGGGTTTCAAAGGGTGAAGAGGAGTTTCTCTGGAGCGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGTTGCTCTCTGTGAGGCACCAGTTTGCTTcccagcttggtgcagtga
gttaaggatctggtgttgctgcagctgtggcataggctgcagctgtggctcagattccag
ccctggctaaggaacttccCGATGTCACAGGTACAGGACAAAAAAACCCAAAAACCAAAA
ACCAAAACAAAACAAAAAACATACTGTAGAAACAGAAGTGAAAGAGGAAAGAAGGAAGGA
AAGTAATGTTTTCAGCCCCTTCTTCAAAGAAGATGCTGCAGTCCTGGATATTTTTTTCTG
CCCAAGGGCAGGAAGAGGACAGGCTTTCAAGGAAAGCAACAAAAAGGAGGGGACTTCTCG
AGTGGGTTTCAAAGGGTGAAGAGGAGTTTCTCTGGAGCGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               244-401, - strand, RNAz p=0.997575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-401, - strand, RNAz p=0.997575

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               193-401, gnl|bosTau2|chr25 (19490274-19490480)
               

               
               193-401, gnl|canFam2|chr6 (25520773-25520624)
               

               
               193-401, gnl|hg17|chr16 (23225307-23225447)
               

               
               193-401, gnl|Hg17|chr16 (23225331-23225526)
               

               
               193-401, gnl|panTro1|chr18 (23839069-23839212)
               

               
               193-401, gnl|rheMac2|chr20 (21793644-21793781)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-401, gnl|bosTau2|chr25 (19490274-19490480)
               

               
               193-401, gnl|canFam2|chr6 (25520773-25520624)
               

               
               193-401, gnl|hg17|chr16 (23225307-23225447)
               

               
               193-401, gnl|Hg17|chr16 (23225331-23225526)
               

               
               193-401, gnl|panTro1|chr18 (23839069-23839212)
               

               
               193-401, gnl|rheMac2|chr20 (21793644-21793781)

	193-401, gnl\|bosTau2\|chr25 (19490274-19490480)
	193-401, gnl\|canFam2\|chr6 (25520773-25520624)
	193-401, gnl\|hg17\|chr16 (23225307-23225447)
	193-401, gnl\|Hg17\|chr16 (23225331-23225526)
	193-401, gnl\|panTro1\|chr18 (23839069-23839212)
	193-401, gnl\|rheMac2\|chr20 (21793644-21793781)