Non-Coding RNA Search

Pig1-21L04

Sequence:


               
               GCGAGAAGGTGAGCTATCTGTGGAGGAGCTACTGCAGCAGTATGCAGGAGCCTATGCTTC
TGATGCCTCTGCCCCAGGTTCTGGGAGTAGTGAAGAGGAAGAGGAAGATGAGGTTGAGGC
TGACAGCTCTGAATCTGAACCAGAGGGGGCCGCAGAAGCTGAAGAGGCTCCTCACGAGGA
TAGTAGCAGTCAATCAGACTCTGCTGAGGAACAGAGTGAAGATGAGGAAGATGAGCATTC
AGAAGAGGAAGAAACAAGCAGGAGTTCAGAATCAGAGGAGTCTGAGTCTGAGGAATCTGA
GGAGTCCCAGTCACAGAGCCAAGCAGATGAGGAGGAAGAAGATGATGACTTCGGGGTGGA
GTACTTGCTTGCCCGGGATGAAGAGCGTAGTGAGGCAGATGGAGGCAGTGGACCTCCCAC
CCCAGGACCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGAAGGTGAGCTATCTGTGGAGGAGCTACTGCAGCAGTATGCAGGAGCCTATGCTTC
TGATGCCTCTGCCCCAGGTTCTGGGAGTAGTGAAGAGGAAGAGGAAGATGAGGTTGAGGC
TGACAGCTCTGAATCTGAACCAGAGGGGGCCGCAGAAGCTGAAGAGGCTCCTCACGAGGA
TAGTAGCAGTCAATCAGACTCTGCTGAGGAACAGAGTGAAGATGAGGAAGATGAGCATTC
AGAAGAGGAAGAAACAAGCAGGAGTTCAGAATCAGAGGAGTCTGAGTCTGAGGAATCTGA
GGAGTCCCAGTCACAGAGCCAAGCAGATGAGGAGGAAGAAGATGATGACTTCGGGGTGGA
GTACTTGCTTGCCCGGGATGAAGAGCGTAGTGAGGCAGATGGAGGCAGTGGACCTCCCAC
CCCAGGACCCACCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               67-197, + strand, RNAz p=0.851412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               67-197, + strand, RNAz p=0.851412

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               7-197, gnl|bosTau2|chr25 (25717910-25717720)
               

               
               7-197, gnl|canFam2|chr6 (20471161-20471005)
               

               
               7-197, gnl|danRer3|chr8 (38268350-38268212)
               

               
               7-197, gnl|dasNov1|scaffold_54935 (5003-4844)
               

               
               7-197, gnl|echTel1|scaffold_307548 (2487-2641)
               

               
               7-197, gnl|fr1|chrUn (215556475-215556357)
               

               
               7-197, gnl|hg17|chr16 (30630361-30630498)
               

               
               7-197, gnl|Hg17|chr16 (30630391-30630566)
               

               
               7-197, gnl|loxAfr1|scaffold_37279 (14770-14615)
               

               
               7-197, gnl|mm7|chr7 (123626706-123626855)
               

               
               7-197, gnl|Mm7|chr7 (123626739-123626917)
               

               
               7-197, gnl|monDom2|scaffold_478 (21207-21360)
               

               
               7-197, gnl|oryCun1|scaffold_197144 (17252-17092)
               

               
               7-197, gnl|panTro1|chr18 (31409009-31409146)
               

               
               7-197, gnl|rheMac2|chr20 (28784722-28784863)
               

               
               7-197, gnl|rn3|chr1 (186964480-186964628)
               

               
               7-197, gnl|tetNig1|chr2 (1483738-1483842)
               

               
               7-197, gnl|xenTro1|scaffold_322 (1061221-1061359)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-197, gnl|bosTau2|chr25 (25717910-25717720)
               

               
               7-197, gnl|canFam2|chr6 (20471161-20471005)
               

               
               7-197, gnl|danRer3|chr8 (38268350-38268212)
               

               
               7-197, gnl|dasNov1|scaffold_54935 (5003-4844)
               

               
               7-197, gnl|echTel1|scaffold_307548 (2487-2641)
               

               
               7-197, gnl|fr1|chrUn (215556475-215556357)
               

               
               7-197, gnl|hg17|chr16 (30630361-30630498)
               

               
               7-197, gnl|Hg17|chr16 (30630391-30630566)
               

               
               7-197, gnl|loxAfr1|scaffold_37279 (14770-14615)
               

               
               7-197, gnl|mm7|chr7 (123626706-123626855)
               

               
               7-197, gnl|Mm7|chr7 (123626739-123626917)
               

               
               7-197, gnl|monDom2|scaffold_478 (21207-21360)
               

               
               7-197, gnl|oryCun1|scaffold_197144 (17252-17092)
               

               
               7-197, gnl|panTro1|chr18 (31409009-31409146)
               

               
               7-197, gnl|rheMac2|chr20 (28784722-28784863)
               

               
               7-197, gnl|rn3|chr1 (186964480-186964628)
               

               
               7-197, gnl|tetNig1|chr2 (1483738-1483842)
               

               
               7-197, gnl|xenTro1|scaffold_322 (1061221-1061359)

	7-197, gnl\|bosTau2\|chr25 (25717910-25717720)
	7-197, gnl\|canFam2\|chr6 (20471161-20471005)
	7-197, gnl\|danRer3\|chr8 (38268350-38268212)
	7-197, gnl\|dasNov1\|scaffold_54935 (5003-4844)
	7-197, gnl\|echTel1\|scaffold_307548 (2487-2641)
	7-197, gnl\|fr1\|chrUn (215556475-215556357)
	7-197, gnl\|hg17\|chr16 (30630361-30630498)
	7-197, gnl\|Hg17\|chr16 (30630391-30630566)
	7-197, gnl\|loxAfr1\|scaffold_37279 (14770-14615)
	7-197, gnl\|mm7\|chr7 (123626706-123626855)
	7-197, gnl\|Mm7\|chr7 (123626739-123626917)
	7-197, gnl\|monDom2\|scaffold_478 (21207-21360)
	7-197, gnl\|oryCun1\|scaffold_197144 (17252-17092)
	7-197, gnl\|panTro1\|chr18 (31409009-31409146)
	7-197, gnl\|rheMac2\|chr20 (28784722-28784863)
	7-197, gnl\|rn3\|chr1 (186964480-186964628)
	7-197, gnl\|tetNig1\|chr2 (1483738-1483842)
	7-197, gnl\|xenTro1\|scaffold_322 (1061221-1061359)