Non-Coding RNA Search

Pig1-23D04

Sequence:


               
               GACGAGAGCAAGATGATGCAGTGCGCGCAGTGTGACCACTGGGTGCATGCCAAGTGCGAG
GGGCTCTCGGATGAAGACTACGAGATCCTTTCAGGGCTGCCAGACTCGGTGCTGTACACC
TGTGGACCGTGTGCTGGGGCCACACACCCCCGCTGGCGAGAGGCCCTGAGCGGGGCCCTG
CAGGGGGGCCTGCGCCAGGTGCTCCAGGGCCTGCTGAGCTCCAAGGTGGCAGGCCCGCTG
CTGCTGTGCACCCAGTGCGGGCAGGATGGAAAGCAGCTGCACCCAGGGCCCTGCGATCTT
CACGCTGTGAGCCAGCGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGAGAGCAAGATGATGCAGTGCGCGCAGTGTGACCACTGGGTGCATGCCAAGTGCGAG
GGGCTCTCGGATGAAGACTACGAGATCCTTTCAGGGCTGCCAGACTCGGTGCTGTACACC
TGTGGACCGTGTGCTGGGGCCACACACCCCCGCTGGCGAGAGGCCCTGAGCGGGGCCCTG
CAGGGGGGCCTGCGCCAGGTGCTCCAGGGCCTGCTGAGCTCCAAGGTGGCAGGCCCGCTG
CTGCTGTGCACCCAGTGCGGGCAGGATGGAAAGCAGCTGCACCCAGGGCCCTGCGATCTT
CACGCTGTGAGCCAGCGCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-268, + strand, RNAz p=0.778727

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-268, + strand, RNAz p=0.778727

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               70-268, gnl|bosTau2|chr18 (36875539-36875741)
               

               
               70-268, gnl|Hg17|chr19 (40910178-40910381)
               

               
               70-268, gnl|Mm7|chr7 (27521498-27521294)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-268, gnl|bosTau2|chr18 (36875539-36875741)
               

               
               70-268, gnl|Hg17|chr19 (40910178-40910381)
               

               
               70-268, gnl|Mm7|chr7 (27521498-27521294)

	70-268, gnl\|bosTau2\|chr18 (36875539-36875741)
	70-268, gnl\|Hg17\|chr19 (40910178-40910381)
	70-268, gnl\|Mm7\|chr7 (27521498-27521294)