Non-Coding RNA Search

Pig1-28A20

Sequence:


               
               GCCGCCATGGCGACCGGGCGTGCTAGGGCGCTCAAGCTGCCGGGGAAGAAGAGCCCGGAC
CTGGGGGAGTATGACCCCCTCACGCAGGCCGACAGCGACGAGAGTGAAGATGACCTCGTG
CTTAACCTGCAGCAGAAGAACGGGGGGGTCAAAAATGGCCAGAGTCCCCTGGGAGAAGCC
CCGGAGCCCGACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCATGGCGACCGGGCGTGCTAGGGCGCTCAAGCTGCCGGGGAAGAAGAGCCCGGAC
CTGGGGGAGTATGACCCCCTCACGCAGGCCGACAGCGACGAGAGTGAAGATGACCTCGTG
CTTAACCTGCAGCAGAAGAACGGGGGGGTCAAAAATGGCCAGAGTCCCCTGGGAGAAGCC
CCGGAGCCCGACTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               67-180, - strand, RNAz p=0.547859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               67-180, - strand, RNAz p=0.547859

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               43-194, gnl|bosTau2|chr5 (56755267-56755116)
               

               
               43-194, gnl|canFam2|chr27 (36344915-36344771)
               

               
               43-194, gnl|danRer3|chr7 (12085449-12085319)
               

               
               43-194, gnl|dasNov1|scaffold_1081 (3164-3299)
               

               
               43-194, gnl|echTel1|scaffold_169290 (7604-7463)
               

               
               43-194, gnl|galGal2|chr1 (45022069-45022205)
               

               
               43-194, gnl|hg17|chr12 (13099723-13099864)
               

               
               43-194, gnl|Hg17|chr12 (13099751-13099899)
               

               
               43-194, gnl|loxAfr1|scaffold_12315 (22487-22347)
               

               
               43-194, gnl|mm7|chr6 (135223326-135223470)
               

               
               43-194, gnl|Mm7|chr6 (135223354-135223505)
               

               
               43-194, gnl|monDom2|scaffold_31 (18275054-18274912)
               

               
               43-194, gnl|oryCun1|scaffold_199234 (135113-134970)
               

               
               43-194, gnl|panTro1|chrUn_random (39354452-39354593)
               

               
               43-194, gnl|rheMac2|chr11 (13430896-13431037)
               

               
               43-194, gnl|rn3|chr4 (172406475-172406619)
               

               
               43-194, gnl|tetNig1|chrUn_random (38392483-38392349)
               

               
               43-194, gnl|xenTro1|scaffold_81 (862374-862530)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-194, gnl|bosTau2|chr5 (56755267-56755116)
               

               
               43-194, gnl|canFam2|chr27 (36344915-36344771)
               

               
               43-194, gnl|danRer3|chr7 (12085449-12085319)
               

               
               43-194, gnl|dasNov1|scaffold_1081 (3164-3299)
               

               
               43-194, gnl|echTel1|scaffold_169290 (7604-7463)
               

               
               43-194, gnl|galGal2|chr1 (45022069-45022205)
               

               
               43-194, gnl|hg17|chr12 (13099723-13099864)
               

               
               43-194, gnl|Hg17|chr12 (13099751-13099899)
               

               
               43-194, gnl|loxAfr1|scaffold_12315 (22487-22347)
               

               
               43-194, gnl|mm7|chr6 (135223326-135223470)
               

               
               43-194, gnl|Mm7|chr6 (135223354-135223505)
               

               
               43-194, gnl|monDom2|scaffold_31 (18275054-18274912)
               

               
               43-194, gnl|oryCun1|scaffold_199234 (135113-134970)
               

               
               43-194, gnl|panTro1|chrUn_random (39354452-39354593)
               

               
               43-194, gnl|rheMac2|chr11 (13430896-13431037)
               

               
               43-194, gnl|rn3|chr4 (172406475-172406619)
               

               
               43-194, gnl|tetNig1|chrUn_random (38392483-38392349)
               

               
               43-194, gnl|xenTro1|scaffold_81 (862374-862530)

	43-194, gnl\|bosTau2\|chr5 (56755267-56755116)
	43-194, gnl\|canFam2\|chr27 (36344915-36344771)
	43-194, gnl\|danRer3\|chr7 (12085449-12085319)
	43-194, gnl\|dasNov1\|scaffold_1081 (3164-3299)
	43-194, gnl\|echTel1\|scaffold_169290 (7604-7463)
	43-194, gnl\|galGal2\|chr1 (45022069-45022205)
	43-194, gnl\|hg17\|chr12 (13099723-13099864)
	43-194, gnl\|Hg17\|chr12 (13099751-13099899)
	43-194, gnl\|loxAfr1\|scaffold_12315 (22487-22347)
	43-194, gnl\|mm7\|chr6 (135223326-135223470)
	43-194, gnl\|Mm7\|chr6 (135223354-135223505)
	43-194, gnl\|monDom2\|scaffold_31 (18275054-18274912)
	43-194, gnl\|oryCun1\|scaffold_199234 (135113-134970)
	43-194, gnl\|panTro1\|chrUn_random (39354452-39354593)
	43-194, gnl\|rheMac2\|chr11 (13430896-13431037)
	43-194, gnl\|rn3\|chr4 (172406475-172406619)
	43-194, gnl\|tetNig1\|chrUn_random (38392483-38392349)
	43-194, gnl\|xenTro1\|scaffold_81 (862374-862530)