Non-Coding RNA Search

Pig1-28D18

Sequence:


               
               GGCGGCTGCTGGCGCGGGACCGGTGCAACCTGCGCCGCAAGCCCCAGGAGCTGGACTTCT
GCATCTTGCGGCCGTGCTGAGCTGGCTCGCCCTCCTCCTCACTCTCCACACCGGCGGTGC
TGCCGACCTGGGCAGAGGACAATGCCCAGCCATGAGGTCACCTGCATCTGAGGACCTGGA
CGGGGAAGCCAAGTCACTAAGGCACAGTCTACCTCACGCCCAGCTCCTCTGGGCTGGCCT
CAGGGGAGGCTGAGAGGTGCGTGGACCTGGGCAGAGGTGCTGAGGCCCAGTCCCCGAGGG
ACCTGGAGGACAGGCCCCTCCCATCAGGACTTCAGGGACCTTGCCCCCATCAGGGAGGCC
ACGGGCTGCTGGAAGAGCCATGACCCGGCAGCTTGGCATCCTCAGGGGCCCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCTGCTGGCGCGGGACCGGTGCAACCTGCGCCGCAAGCCCCAGGAGCTGGACTTCT
GCATCTTGCGGCCGTGCTGAGCTGGCTCGCCCTCCTCCTCACTCTCCACACCGGCGGTGC
TGCCGACCTGGGCAGAGGACAATGCCCAGCCATGAGGTCACCTGCATCTGAGGACCTGGA
CGGGGAAGCCAAGTCACTAAGGCACAGTCTACCTCACGCCCAGCTCCTCTGGGCTGGCCT
CAGGGGAGGCTGAGAGGTGCGTGGACCTGGGCAGAGGTGCTGAGGCCCAGTCCCCGAGGG
ACCTGGAGGACAGGCCCCTCCCATCAGGACTTCAGGGACCTTGCCCCCATCAGGGAGGCC
ACGGGCTGCTGGAAGAGCCATGACCCGGCAGCTTGGCATCCTCAGGGGCCCTGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-411, - strand, RNAz p=0.992139

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-411, - strand, RNAz p=0.992139

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-411, gnl|bosTau2|chr29 (28853082-28852644)
               

               
               1-411, gnl|Hg17|chr11 (129848847-129849331)
               

               
               1-411, gnl|Mm7|chr9 (30803119-30802646)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-411, gnl|bosTau2|chr29 (28853082-28852644)
               

               
               1-411, gnl|Hg17|chr11 (129848847-129849331)
               

               
               1-411, gnl|Mm7|chr9 (30803119-30802646)

	1-411, gnl\|bosTau2\|chr29 (28853082-28852644)
	1-411, gnl\|Hg17\|chr11 (129848847-129849331)
	1-411, gnl\|Mm7\|chr9 (30803119-30802646)