Non-Coding RNA Search

Pig1-28F07

Sequence:


               
               GGCAATCTTGAAAACTGGGCTTTCTGGTTATGTTTTTCTTTGAAAGTCTTTAAATTAGAG
GGTGCTGTGCCCCTGGTCACTGCAAGTTAATATGGGGTTCTGTTTCAAGGGGAAATTACG
TCGGCTTTGAACTGATGCGCTAATACTTTGATATGTGCCATTCTTGCACATACGTTTCAA
TCCTAACTCAGTGTTCTAGTGGTATCTCAGACCTTTGGGAAGATATTTAATAAACGCTTA
ATNNATNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAATCTTGAAAACTGGGCTTTCTGGTTATGTTTTTCTTTGAAAGTCTTTAAATTAGAG
GGTGCTGTGCCCCTGGTCACTGCAAGTTAATATGGGGTTCTGTTTCAAGGGGAAATTACG
TCGGCTTTGAACTGATGCGCTAATACTTTGATATGTGCCATTCTTGCACATACGTTTCAA
TCCTAACTCAGTGTTCTAGTGGTATCTCAGACCTTTGGGAAGATATTTAATAAACGCTTA
ATNNATNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               8-123, + strand, RNAz p=0.515645

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-123, + strand, RNAz p=0.515645

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               8-252, gnl|bosTau2|chr5 (26966013-26966249)
               

               
               8-252, gnl|canFam2|chr27 (14449480-14449267)
               

               
               8-252, gnl|dasNov1|scaffold_6826 (68623-68424)
               

               
               8-252, gnl|echTel1|scaffold_274909 (17109-16889)
               

               
               8-252, gnl|hg17|chr12 (41138424-41138655)
               

               
               8-252, gnl|Hg17|chr12 (41138669-41138424)
               

               
               8-252, gnl|loxAfr1|scaffold_407 (190243-190013)
               

               
               8-252, gnl|mm7|chr15 (93579484-93579702)
               

               
               8-252, gnl|Mm7|chr15 (93579715-93579484)
               

               
               8-252, gnl|oryCun1|scaffold_205272 (118827-118617)
               

               
               8-252, gnl|panTro1|chr10 (41731928-41732159)
               

               
               8-252, gnl|rheMac2|chr11 (39390572-39390805)
               

               
               8-252, gnl|rn3|chr7 (132043672-132043895)
               


               
               55-241, gnl|bosTau2|chr28 (34841997-34841811)
               

               
               55-241, gnl|Mm7|chr15 (93579640-93579488)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-252, gnl|bosTau2|chr5 (26966013-26966249)
               

               
               8-252, gnl|canFam2|chr27 (14449480-14449267)
               

               
               8-252, gnl|dasNov1|scaffold_6826 (68623-68424)
               

               
               8-252, gnl|echTel1|scaffold_274909 (17109-16889)
               

               
               8-252, gnl|hg17|chr12 (41138424-41138655)
               

               
               8-252, gnl|Hg17|chr12 (41138669-41138424)
               

               
               8-252, gnl|loxAfr1|scaffold_407 (190243-190013)
               

               
               8-252, gnl|mm7|chr15 (93579484-93579702)
               

               
               8-252, gnl|Mm7|chr15 (93579715-93579484)
               

               
               8-252, gnl|oryCun1|scaffold_205272 (118827-118617)
               

               
               8-252, gnl|panTro1|chr10 (41731928-41732159)
               

               
               8-252, gnl|rheMac2|chr11 (39390572-39390805)
               

               
               8-252, gnl|rn3|chr7 (132043672-132043895)
               


               
               55-241, gnl|bosTau2|chr28 (34841997-34841811)
               

               
               55-241, gnl|Mm7|chr15 (93579640-93579488)

	8-252, gnl\|bosTau2\|chr5 (26966013-26966249)
	8-252, gnl\|canFam2\|chr27 (14449480-14449267)
	8-252, gnl\|dasNov1\|scaffold_6826 (68623-68424)
	8-252, gnl\|echTel1\|scaffold_274909 (17109-16889)
	8-252, gnl\|hg17\|chr12 (41138424-41138655)
	8-252, gnl\|Hg17\|chr12 (41138669-41138424)
	8-252, gnl\|loxAfr1\|scaffold_407 (190243-190013)
	8-252, gnl\|mm7\|chr15 (93579484-93579702)
	8-252, gnl\|Mm7\|chr15 (93579715-93579484)
	8-252, gnl\|oryCun1\|scaffold_205272 (118827-118617)
	8-252, gnl\|panTro1\|chr10 (41731928-41732159)
	8-252, gnl\|rheMac2\|chr11 (39390572-39390805)
	8-252, gnl\|rn3\|chr7 (132043672-132043895)

	55-241, gnl\|bosTau2\|chr28 (34841997-34841811)
	55-241, gnl\|Mm7\|chr15 (93579640-93579488)