Non-Coding RNA Search

Pig1-28J15

Sequence:


               
               GTTTTAACTTTTCTAATAGAAGTGTTGCTATGCAAGACCCATGGCTTATGCCATCCATAT
TTGAGAACATAATCTTATCTTCTTGGGAAAAAACTTTGGATGTGACATTCCAAGTTATTT
TAGCTGTACCAAATCATGTAATTTGATATAGCAACTCTCCTGGAAAGACATATCAAAGTA
AACTGATAAATAAATCCTTTGTTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTAACTTTTCTAATAGAAGTGTTGCTATGCAAGACCCATGGCTTATGCCATCCATAT
TTGAGAACATAATCTTATCTTCTTGGGAAAAAACTTTGGATGTGACATTCCAAGTTATTT
TAGCTGTACCAAATCATGTAATTTGATATAGCAACTCTCCTGGAAAGACATATCAAAGTA
AACTGATAAATAAATCCTTTGTTTCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               41-160, - strand, RNAz p=0.787741

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.787741

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               2-190, gnl|bosTau2|chr7 (67100592-67100779)
               

               
               2-190, gnl|canFam2|chr3 (7188365-7188212)
               

               
               2-190, gnl|danRer3|chr21 (11259506-11259292)
               

               
               2-190, gnl|dasNov1|scaffold_20 (308849-309003)
               

               
               2-190, gnl|hg17|chr5 (107000127-107000276)
               

               
               2-190, gnl|Hg17|chr5 (107000338-107000161)
               

               
               2-190, gnl|mm7|chr17 (61055001-61055170)
               

               
               2-190, gnl|Mm7|chr17 (61055234-61055046)
               

               
               2-190, gnl|monDom2|scaffold_27 (10734705-10734881)
               

               
               2-190, gnl|oryCun1|scaffold_201167 (616931-617089)
               

               
               2-190, gnl|panTro1|chr4 (112990246-112990395)
               

               
               2-190, gnl|rheMac2|chr6 (103948992-103949143)
               

               
               2-190, gnl|rn3|chr9 (101708338-101708501)
               

               
               2-190, gnl|xenTro1|scaffold_113 (1939773-1939643)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-190, gnl|bosTau2|chr7 (67100592-67100779)
               

               
               2-190, gnl|canFam2|chr3 (7188365-7188212)
               

               
               2-190, gnl|danRer3|chr21 (11259506-11259292)
               

               
               2-190, gnl|dasNov1|scaffold_20 (308849-309003)
               

               
               2-190, gnl|hg17|chr5 (107000127-107000276)
               

               
               2-190, gnl|Hg17|chr5 (107000338-107000161)
               

               
               2-190, gnl|mm7|chr17 (61055001-61055170)
               

               
               2-190, gnl|Mm7|chr17 (61055234-61055046)
               

               
               2-190, gnl|monDom2|scaffold_27 (10734705-10734881)
               

               
               2-190, gnl|oryCun1|scaffold_201167 (616931-617089)
               

               
               2-190, gnl|panTro1|chr4 (112990246-112990395)
               

               
               2-190, gnl|rheMac2|chr6 (103948992-103949143)
               

               
               2-190, gnl|rn3|chr9 (101708338-101708501)
               

               
               2-190, gnl|xenTro1|scaffold_113 (1939773-1939643)

	2-190, gnl\|bosTau2\|chr7 (67100592-67100779)
	2-190, gnl\|canFam2\|chr3 (7188365-7188212)
	2-190, gnl\|danRer3\|chr21 (11259506-11259292)
	2-190, gnl\|dasNov1\|scaffold_20 (308849-309003)
	2-190, gnl\|hg17\|chr5 (107000127-107000276)
	2-190, gnl\|Hg17\|chr5 (107000338-107000161)
	2-190, gnl\|mm7\|chr17 (61055001-61055170)
	2-190, gnl\|Mm7\|chr17 (61055234-61055046)
	2-190, gnl\|monDom2\|scaffold_27 (10734705-10734881)
	2-190, gnl\|oryCun1\|scaffold_201167 (616931-617089)
	2-190, gnl\|panTro1\|chr4 (112990246-112990395)
	2-190, gnl\|rheMac2\|chr6 (103948992-103949143)
	2-190, gnl\|rn3\|chr9 (101708338-101708501)
	2-190, gnl\|xenTro1\|scaffold_113 (1939773-1939643)