Non-Coding RNA Search

Pig1-28O11

Sequence:


               
               GGCGGAGCTCCCTGGAGGCCAGCTTGGGCCGTGCGCAGGAGAACTACGAGCAGCTGGTGG
AGCAGCGCACCCGGGAGCTGCGTGAGCGGGCCCGTCGGGAGGAACTACAGGGCCGGCGGG
CCAAGGAGGCAGCGGAGCGCAAAGAGCGGGAGCATCAGGCTCACCTGGAGGCGCTGGCCC
GGGCGGGCGAGCGGCGGCTGCAGCATGCGACGCAGGCGGCTGAGGAGGCTGTGCAGCAGA
AGGCAAGGCGTGTTGGCCAGAGCCGGCTGGAAAAGGAGCGGGCCCAGCGCGCCAACAAGG
AGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGAGCTCCCTGGAGGCCAGCTTGGGCCGTGCGCAGGAGAACTACGAGCAGCTGGTGG
AGCAGCGCACCCGGGAGCTGCGTGAGCGGGCCCGTCGGGAGGAACTACAGGGCCGGCGGG
CCAAGGAGGCAGCGGAGCGCAAAGAGCGGGAGCATCAGGCTCACCTGGAGGCGCTGGCCC
GGGCGGGCGAGCGGCGGCTGCAGCATGCGACGCAGGCGGCTGAGGAGGCTGTGCAGCAGA
AGGCAAGGCGTGTTGGCCAGAGCCGGCTGGAAAAGGAGCGGGCCCAGCGCGCCAACAAGG
AGAAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               20-138, - strand, RNAz p=0.802376

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-138, - strand, RNAz p=0.802376

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               2-306, gnl|bosTau2|chr10 (55832103-55831799)
               

               
               2-306, gnl|canFam2|chr8 (46371635-46372107)
               

               
               2-306, gnl|danRer3|chr1 (9565721-9566175)
               

               
               2-306, gnl|echTel1|scaffold_309022 (76212-76684)
               

               
               2-306, gnl|fr1|chrUn (308346597-308346125)
               

               
               2-306, gnl|galGal2|chr5 (24875459-24874994)
               

               
               2-306, gnl|hg17|chr14 (69107963-69108435)
               

               
               2-306, gnl|Hg17|chr14 (69108503-69108199)
               

               
               2-306, gnl|mm7|chr12 (78720158-78720630)
               

               
               2-306, gnl|Mm7|chr12 (78720698-78720394)
               

               
               2-306, gnl|monDom2|scaffold_8 (86247947-86248416)
               

               
               2-306, gnl|oryCun1|scaffold_199344 (7401-7873)
               

               
               2-306, gnl|panTro1|chr15 (68786209-68786681)
               

               
               2-306, gnl|rheMac2|chr7 (132706035-132706507)
               

               
               2-306, gnl|rn3|chr6 (104527284-104527756)
               

               
               2-306, gnl|tetNig1|chr10 (11592954-11593425)
               

               
               2-306, gnl|xenTro1|scaffold_117 (374606-374141)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-306, gnl|bosTau2|chr10 (55832103-55831799)
               

               
               2-306, gnl|canFam2|chr8 (46371635-46372107)
               

               
               2-306, gnl|danRer3|chr1 (9565721-9566175)
               

               
               2-306, gnl|echTel1|scaffold_309022 (76212-76684)
               

               
               2-306, gnl|fr1|chrUn (308346597-308346125)
               

               
               2-306, gnl|galGal2|chr5 (24875459-24874994)
               

               
               2-306, gnl|hg17|chr14 (69107963-69108435)
               

               
               2-306, gnl|Hg17|chr14 (69108503-69108199)
               

               
               2-306, gnl|mm7|chr12 (78720158-78720630)
               

               
               2-306, gnl|Mm7|chr12 (78720698-78720394)
               

               
               2-306, gnl|monDom2|scaffold_8 (86247947-86248416)
               

               
               2-306, gnl|oryCun1|scaffold_199344 (7401-7873)
               

               
               2-306, gnl|panTro1|chr15 (68786209-68786681)
               

               
               2-306, gnl|rheMac2|chr7 (132706035-132706507)
               

               
               2-306, gnl|rn3|chr6 (104527284-104527756)
               

               
               2-306, gnl|tetNig1|chr10 (11592954-11593425)
               

               
               2-306, gnl|xenTro1|scaffold_117 (374606-374141)

	2-306, gnl\|bosTau2\|chr10 (55832103-55831799)
	2-306, gnl\|canFam2\|chr8 (46371635-46372107)
	2-306, gnl\|danRer3\|chr1 (9565721-9566175)
	2-306, gnl\|echTel1\|scaffold_309022 (76212-76684)
	2-306, gnl\|fr1\|chrUn (308346597-308346125)
	2-306, gnl\|galGal2\|chr5 (24875459-24874994)
	2-306, gnl\|hg17\|chr14 (69107963-69108435)
	2-306, gnl\|Hg17\|chr14 (69108503-69108199)
	2-306, gnl\|mm7\|chr12 (78720158-78720630)
	2-306, gnl\|Mm7\|chr12 (78720698-78720394)
	2-306, gnl\|monDom2\|scaffold_8 (86247947-86248416)
	2-306, gnl\|oryCun1\|scaffold_199344 (7401-7873)
	2-306, gnl\|panTro1\|chr15 (68786209-68786681)
	2-306, gnl\|rheMac2\|chr7 (132706035-132706507)
	2-306, gnl\|rn3\|chr6 (104527284-104527756)
	2-306, gnl\|tetNig1\|chr10 (11592954-11593425)
	2-306, gnl\|xenTro1\|scaffold_117 (374606-374141)