Non-Coding RNA Search

Pig1-29D01

Sequence:


               
               GATTTTGGCATTGTAAAATCACAGATCTATCATAGAGTAAGTTTAGAGATACATACTTAA
GAAATGTTGCATGCCGTGACATTTTCATTCCCAAAGTGGTCTATGTGGACTCATATTTAT
TTTGCTCTTCTATAAAAGCAGAAGTCATACGAGGTATCGAGTAAAATTCTTTATCCAGGA
GGACAGATAGAACACTTATTGAAATACTGCCACTGTTATTTAATTCAAAAGTGCCCATCT
CAAAATGAACCGCATCAGGACCATTTTCAATTTTTTAATGTCTCTAGTGGCTCTTAGCAC
ACCTTTTTTTAAGTTATTCATTTTAAATTATGATTATATGAATATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTTGGCATTGTAAAATCACAGATCTATCATAGAGTAAGTTTAGAGATACATACTTAA
GAAATGTTGCATGCCGTGACATTTTCATTCCCAAAGTGGTCTATGTGGACTCATATTTAT
TTTGCTCTTCTATAAAAGCAGAAGTCATACGAGGTATCGAGTAAAATTCTTTATCCAGGA
GGACAGATAGAACACTTATTGAAATACTGCCACTGTTATTTAATTCAAAAGTGCCCATCT
CAAAATGAACCGCATCAGGACCATTTTCAATTTTTTAATGTCTCTAGTGGCTCTTAGCAC
ACCTTTTTTTAAGTTATTCATTTTAAATTATGATTATATGAATATTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               43-202, + strand, RNAz p=0.805326

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-202, + strand, RNAz p=0.805326

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-348, gnl|bosTau2|chr22 (24345818-24346159)
               

               
               4-348, gnl|canFam2|chr20 (23645682-23645439)
               

               
               4-348, gnl|dasNov1|scaffold_28177 (10713-10955)
               

               
               4-348, gnl|echTel1|scaffold_317135 (175598-175358)
               

               
               4-348, gnl|hg17|chr3 (71494932-71495199)
               

               
               4-348, gnl|Hg17|chr3 (71495303-71494931)
               

               
               4-348, gnl|mm7|chr6 (99400108-99400339)
               

               
               4-348, gnl|Mm7|chr6 (99400440-99400107)
               

               
               4-348, gnl|monDom2|scaffold_5 (19062508-19062735)
               

               
               4-348, gnl|oryCun1|scaffold_213555 (400678-400928)
               

               
               4-348, gnl|panTro1|chr2 (73437059-73437325)
               

               
               4-348, gnl|rheMac2|chr2 (64853277-64853033)
               

               
               4-348, gnl|rn3|chr4 (134402343-134402574)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-348, gnl|bosTau2|chr22 (24345818-24346159)
               

               
               4-348, gnl|canFam2|chr20 (23645682-23645439)
               

               
               4-348, gnl|dasNov1|scaffold_28177 (10713-10955)
               

               
               4-348, gnl|echTel1|scaffold_317135 (175598-175358)
               

               
               4-348, gnl|hg17|chr3 (71494932-71495199)
               

               
               4-348, gnl|Hg17|chr3 (71495303-71494931)
               

               
               4-348, gnl|mm7|chr6 (99400108-99400339)
               

               
               4-348, gnl|Mm7|chr6 (99400440-99400107)
               

               
               4-348, gnl|monDom2|scaffold_5 (19062508-19062735)
               

               
               4-348, gnl|oryCun1|scaffold_213555 (400678-400928)
               

               
               4-348, gnl|panTro1|chr2 (73437059-73437325)
               

               
               4-348, gnl|rheMac2|chr2 (64853277-64853033)
               

               
               4-348, gnl|rn3|chr4 (134402343-134402574)

	4-348, gnl\|bosTau2\|chr22 (24345818-24346159)
	4-348, gnl\|canFam2\|chr20 (23645682-23645439)
	4-348, gnl\|dasNov1\|scaffold_28177 (10713-10955)
	4-348, gnl\|echTel1\|scaffold_317135 (175598-175358)
	4-348, gnl\|hg17\|chr3 (71494932-71495199)
	4-348, gnl\|Hg17\|chr3 (71495303-71494931)
	4-348, gnl\|mm7\|chr6 (99400108-99400339)
	4-348, gnl\|Mm7\|chr6 (99400440-99400107)
	4-348, gnl\|monDom2\|scaffold_5 (19062508-19062735)
	4-348, gnl\|oryCun1\|scaffold_213555 (400678-400928)
	4-348, gnl\|panTro1\|chr2 (73437059-73437325)
	4-348, gnl\|rheMac2\|chr2 (64853277-64853033)
	4-348, gnl\|rn3\|chr4 (134402343-134402574)