Non-Coding RNA Search

Pig1-2J21

Sequence:


               
               CCCCCTGGGATGGCCAGTCCTCAGGCCCAGGACCCGAGCCTGTGCAAACCCCACTTTCCA
CTAACCAGACCGCAACCCTGGGAAGGCAGGCCTTCCAGGAGCCCTTCATTCCCTGGGCGT
GGGCTCCAGAGGGCCTCCCTGTGTACACGGGACCAAGCATGTCAGGCCTGGATTTCAAAC
AGGGATCCTTCAAGTGGTCTGTGGCCTGGGTCAGGACAGGGTTACGTCCCTGTTTACAGA
ATGTCAAGGCCATTGGTTCAACGGCCTAATAAATACCTGGGTATTTAATGAAAGCCTTAT
TGATGGCTGTTTTAGGGTCTTGGCAGGAAACAGCATACTCAAATTGAGTAATTTAAGAAT
ATTTGAAGAGTGAATATAGGAACCCTAAGGGGTTATGTGCATTATATCCCAGAAGTAGTA
AGGTGGTCTTTTCCAGGCCTGAGGAGAGGGGCACGTCCAGCCTGCTGTAGCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCTGGGATGGCCAGTCCTCAGGCCCAGGACCCGAGCCTGTGCAAACCCCACTTTCCA
CTAACCAGACCGCAACCCTGGGAAGGCAGGCCTTCCAGGAGCCCTTCATTCCCTGGGCGT
GGGCTCCAGAGGGCCTCCCTGTGTACACGGGACCAAGCATGTCAGGCCTGGATTTCAAAC
AGGGATCCTTCAAGTGGTCTGTGGCCTGGGTCAGGACAGGGTTACGTCCCTGTTTACAGA
ATGTCAAGGCCATTGGTTCAACGGCCTAATAAATACCTGGGTATTTAATGAAAGCCTTAT
TGATGGCTGTTTTAGGGTCTTGGCAGGAAACAGCATACTCAAATTGAGTAATTTAAGAAT
ATTTGAAGAGTGAATATAGGAACCCTAAGGGGTTATGTGCATTATATCCCAGAAGTAGTA
AGGTGGTCTTTTCCAGGCCTGAGGAGAGGGGCACGTCCAGCCTGCTGTAGCCCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-404, + strand, RNAz p=0.999796

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-404, + strand, RNAz p=0.999796

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               9-128, - strand, RNAmicro p=0.999987

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               9-128, - strand, RNAmicro p=0.999987

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               238-404, 168695 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BE482790.1|), 
blast E-value=0, identity=100% 
               

               
               157-404, 150901 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE666951.1|), 
blast E-value=0, identity=100% 
               

               
               1-294, 484857 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI976139.1|), 
blast E-value=0, identity=99.66% 
               

               
               50-404, LB02810.CR_O06 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908367.1|), 
blast E-value=0, identity=99.72% 
               

               
               237-404, LB02920.CR_D20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV919844.1|), 
blast E-value=0, identity=100% 
               

               
               170-404, 000928BEMN030273HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY212584.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               238-404, 168695 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BE482790.1|), 
blast E-value=0, identity=100% 
               

               
               157-404, 150901 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE666951.1|), 
blast E-value=0, identity=100% 
               

               
               1-294, 484857 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI976139.1|), 
blast E-value=0, identity=99.66% 
               

               
               50-404, LB02810.CR_O06 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908367.1|), 
blast E-value=0, identity=99.72% 
               

               
               237-404, LB02920.CR_D20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV919844.1|), 
blast E-value=0, identity=100% 
               

               
               170-404, 000928BEMN030273HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY212584.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_018344, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018344, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-475, gnl|bosTau2|chr28 (21675595-21675121)
               

               
               1-475, gnl|Hg17|chr10 (72792834-72793825)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-475, gnl|bosTau2|chr28 (21675595-21675121)
               

               
               1-475, gnl|Hg17|chr10 (72792834-72793825)

	238-404, 168695 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE482790.1\|), blast E-value=0, identity=100%
	157-404, 150901 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE666951.1\|), blast E-value=0, identity=100%
	1-294, 484857 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI976139.1\|), blast E-value=0, identity=99.66%
	50-404, LB02810.CR_O06 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV908367.1\|), blast E-value=0, identity=99.72%
	237-404, LB02920.CR_D20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV919844.1\|), blast E-value=0, identity=100%
	170-404, 000928BEMN030273HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY212584.1\|), blast E-value=0, identity=100%

	1-475, gnl\|bosTau2\|chr28 (21675595-21675121)
	1-475, gnl\|Hg17\|chr10 (72792834-72793825)