Non-Coding RNA Search

Pig1-2L24

Sequence:


               
               GTTGACAGCCAAGAAGATGACCCTGGAGAGCTCCGAGAGGACCGTGTCTGACCTGACAGC
TTCTCTGCAGGAAAAAGAGAGGGCCATCGAGGCCACCAACTCGGAGATCCTGAAGCTGCG
ATCCCGGGTGGACCTGAAGCTGCAGGAGCTGCAGCACCTGAAGAATGAGGGGGATCACCT
CCGAGACGTGCAGACCGAGTGCGAGGCCCTCAAGCTGCAGATGGCAGAGAAGGACAAAGT
CATCGAGATCCTGCGGCAGCAGATTGAGAACATGACCCAGCTGGTGGGCCAGCACGGCCG
GACGGCTGGCGCCATGCAGGTGGAGAAGGCCCGGCTGGAGAAGGAGGTTGGCGACCGGAG
GCTGGAGCTGCAGGAGCTGAAGATTTTGAAAGATAAAAAAGATGCAAAGATACGGGAGCT
TGAGGCCAGAGTGAGTGACCTGGAGCTGGAAAAGGTGAAGCTGGTGAATGCAGGTTCTGA
GCGGCTCCGTGCAGTGAAGGACATCAAACAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGACAGCCAAGAAGATGACCCTGGAGAGCTCCGAGAGGACCGTGTCTGACCTGACAGC
TTCTCTGCAGGAAAAAGAGAGGGCCATCGAGGCCACCAACTCGGAGATCCTGAAGCTGCG
ATCCCGGGTGGACCTGAAGCTGCAGGAGCTGCAGCACCTGAAGAATGAGGGGGATCACCT
CCGAGACGTGCAGACCGAGTGCGAGGCCCTCAAGCTGCAGATGGCAGAGAAGGACAAAGT
CATCGAGATCCTGCGGCAGCAGATTGAGAACATGACCCAGCTGGTGGGCCAGCACGGCCG
GACGGCTGGCGCCATGCAGGTGGAGAAGGCCCGGCTGGAGAAGGAGGTTGGCGACCGGAG
GCTGGAGCTGCAGGAGCTGAAGATTTTGAAAGATAAAAAAGATGCAAAGATACGGGAGCT
TGAGGCCAGAGTGAGTGACCTGGAGCTGGAAAAGGTGAAGCTGGTGAATGCAGGTTCTGA
GCGGCTCCGTGCAGTGAAGGACATCAAACAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-240, - strand, RNAz p=0.657135
               

               
               148-263, - strand, RNAz p=0.650402

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-240, - strand, RNAz p=0.657135
               

               
               148-263, - strand, RNAz p=0.650402

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-382, gnl|bosTau2|chr6 (47548942-47548561)
               

               
               1-382, gnl|canFam2|chr32 (3985576-3985983)
               

               
               1-382, gnl|dasNov1|scaffold_11891 (17120-17516)
               

               
               1-382, gnl|echTel1|scaffold_307008 (40994-41399)
               

               
               1-382, gnl|hg17|chr4 (77645573-77645972)
               

               
               1-382, gnl|Hg17|chr4 (77646007-77645626)
               

               
               1-382, gnl|loxAfr1|scaffold_89283 (723-343)
               

               
               1-382, gnl|mm7|chr5 (92635843-92636246)
               

               
               1-382, gnl|Mm7|chr5 (92636281-92635900)
               

               
               1-382, gnl|monDom2|scaffold_32 (29821871-29822261)
               

               
               1-382, gnl|oryCun1|scaffold_206754 (32328-32738)
               

               
               1-382, gnl|panTro1|chr3 (56077937-56077538)
               

               
               1-382, gnl|rheMac2|chr5 (53221417-53221014)
               

               
               1-382, gnl|rn3|chr14 (16997325-16996922)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-382, gnl|bosTau2|chr6 (47548942-47548561)
               

               
               1-382, gnl|canFam2|chr32 (3985576-3985983)
               

               
               1-382, gnl|dasNov1|scaffold_11891 (17120-17516)
               

               
               1-382, gnl|echTel1|scaffold_307008 (40994-41399)
               

               
               1-382, gnl|hg17|chr4 (77645573-77645972)
               

               
               1-382, gnl|Hg17|chr4 (77646007-77645626)
               

               
               1-382, gnl|loxAfr1|scaffold_89283 (723-343)
               

               
               1-382, gnl|mm7|chr5 (92635843-92636246)
               

               
               1-382, gnl|Mm7|chr5 (92636281-92635900)
               

               
               1-382, gnl|monDom2|scaffold_32 (29821871-29822261)
               

               
               1-382, gnl|oryCun1|scaffold_206754 (32328-32738)
               

               
               1-382, gnl|panTro1|chr3 (56077937-56077538)
               

               
               1-382, gnl|rheMac2|chr5 (53221417-53221014)
               

               
               1-382, gnl|rn3|chr14 (16997325-16996922)

	1-240, - strand, RNAz p=0.657135
	148-263, - strand, RNAz p=0.650402

	1-382, gnl\|bosTau2\|chr6 (47548942-47548561)
	1-382, gnl\|canFam2\|chr32 (3985576-3985983)
	1-382, gnl\|dasNov1\|scaffold_11891 (17120-17516)
	1-382, gnl\|echTel1\|scaffold_307008 (40994-41399)
	1-382, gnl\|hg17\|chr4 (77645573-77645972)
	1-382, gnl\|Hg17\|chr4 (77646007-77645626)
	1-382, gnl\|loxAfr1\|scaffold_89283 (723-343)
	1-382, gnl\|mm7\|chr5 (92635843-92636246)
	1-382, gnl\|Mm7\|chr5 (92636281-92635900)
	1-382, gnl\|monDom2\|scaffold_32 (29821871-29822261)
	1-382, gnl\|oryCun1\|scaffold_206754 (32328-32738)
	1-382, gnl\|panTro1\|chr3 (56077937-56077538)
	1-382, gnl\|rheMac2\|chr5 (53221417-53221014)
	1-382, gnl\|rn3\|chr14 (16997325-16996922)