Non-Coding RNA Search

Pig1-30A05

Sequence:


               
               GCACAGCCCAGCTGGTGGCGGCCTCCAAGGTGAAGGCTGACAAGCACAGCCCCCACCTGA
GTCGCCTGCAGGAGTGCTCACGCACCGTCAACGAGATGGCTGCCAACGTGGTGGCCTCCA
CCAAGTCAGGCCAGGAACAGATTGAGGACAGAGACACCATGGACTTTTCTGGCCTCTCCC
TCATCAAGCTGAAGAAGCAGGAGATGGAGACCCAGGTGCGGGTCCTGGAGCTGGAGAAAA
CCCTGGAGGTGGAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGCCCAGCTGGTGGCGGCCTCCAAGGTGAAGGCTGACAAGCACAGCCCCCACCTGA
GTCGCCTGCAGGAGTGCTCACGCACCGTCAACGAGATGGCTGCCAACGTGGTGGCCTCCA
CCAAGTCAGGCCAGGAACAGATTGAGGACAGAGACACCATGGACTTTTCTGGCCTCTCCC
TCATCAAGCTGAAGAAGCAGGAGATGGAGACCCAGGTGCGGGTCCTGGAGCTGGAGAAAA
CCCTGGAGGTGGAGCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               25-140, + strand, RNAz p=0.830897

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-140, + strand, RNAz p=0.830897

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               25-153, gnl|bosTau2|chr17 (28304886-28305014)
               

               
               25-153, gnl|canFam2|chr26 (9642111-9641979)
               

               
               25-153, gnl|danRer3|chr25 (2287322-2287184)
               

               
               25-153, gnl|dasNov1|scaffold_95321 (1272-1124)
               

               
               25-153, gnl|echTel1|scaffold_317027 (43031-43167)
               

               
               25-153, gnl|fr1|chrUn (72480518-72480650)
               

               
               25-153, gnl|galGal2|chr19 (202652-202504)
               

               
               25-153, gnl|hg17|chr12 (121870331-121870469)
               

               
               25-153, gnl|Hg17|chr12 (121870337-121870466)
               

               
               25-153, gnl|loxAfr1|scaffold_4238 (14266-14403)
               

               
               25-153, gnl|mm7|chr5 (123247261-123247396)
               

               
               25-153, gnl|Mm7|chr5 (123247262-123247393)
               

               
               25-153, gnl|monDom2|scaffold_97 (3221483-3221620)
               

               
               25-153, gnl|oryCun1|scaffold_141351 (4089-3954)
               

               
               25-153, gnl|rheMac2|chr11 (124120444-124120582)
               

               
               25-153, gnl|rn3|chr12 (33579465-33579330)
               

               
               25-153, gnl|tetNig1|chr12 (6975556-6975418)
               

               
               25-153, gnl|xenTro1|scaffold_100 (1748274-1748430)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-153, gnl|bosTau2|chr17 (28304886-28305014)
               

               
               25-153, gnl|canFam2|chr26 (9642111-9641979)
               

               
               25-153, gnl|danRer3|chr25 (2287322-2287184)
               

               
               25-153, gnl|dasNov1|scaffold_95321 (1272-1124)
               

               
               25-153, gnl|echTel1|scaffold_317027 (43031-43167)
               

               
               25-153, gnl|fr1|chrUn (72480518-72480650)
               

               
               25-153, gnl|galGal2|chr19 (202652-202504)
               

               
               25-153, gnl|hg17|chr12 (121870331-121870469)
               

               
               25-153, gnl|Hg17|chr12 (121870337-121870466)
               

               
               25-153, gnl|loxAfr1|scaffold_4238 (14266-14403)
               

               
               25-153, gnl|mm7|chr5 (123247261-123247396)
               

               
               25-153, gnl|Mm7|chr5 (123247262-123247393)
               

               
               25-153, gnl|monDom2|scaffold_97 (3221483-3221620)
               

               
               25-153, gnl|oryCun1|scaffold_141351 (4089-3954)
               

               
               25-153, gnl|rheMac2|chr11 (124120444-124120582)
               

               
               25-153, gnl|rn3|chr12 (33579465-33579330)
               

               
               25-153, gnl|tetNig1|chr12 (6975556-6975418)
               

               
               25-153, gnl|xenTro1|scaffold_100 (1748274-1748430)

	25-153, gnl\|bosTau2\|chr17 (28304886-28305014)
	25-153, gnl\|canFam2\|chr26 (9642111-9641979)
	25-153, gnl\|danRer3\|chr25 (2287322-2287184)
	25-153, gnl\|dasNov1\|scaffold_95321 (1272-1124)
	25-153, gnl\|echTel1\|scaffold_317027 (43031-43167)
	25-153, gnl\|fr1\|chrUn (72480518-72480650)
	25-153, gnl\|galGal2\|chr19 (202652-202504)
	25-153, gnl\|hg17\|chr12 (121870331-121870469)
	25-153, gnl\|Hg17\|chr12 (121870337-121870466)
	25-153, gnl\|loxAfr1\|scaffold_4238 (14266-14403)
	25-153, gnl\|mm7\|chr5 (123247261-123247396)
	25-153, gnl\|Mm7\|chr5 (123247262-123247393)
	25-153, gnl\|monDom2\|scaffold_97 (3221483-3221620)
	25-153, gnl\|oryCun1\|scaffold_141351 (4089-3954)
	25-153, gnl\|rheMac2\|chr11 (124120444-124120582)
	25-153, gnl\|rn3\|chr12 (33579465-33579330)
	25-153, gnl\|tetNig1\|chr12 (6975556-6975418)
	25-153, gnl\|xenTro1\|scaffold_100 (1748274-1748430)