Non-Coding RNA Search

Pig1-30H24

Sequence:


               
               GGTGTGAAGTTGCCCACCCCCATGCAGAGCCTGGGTGCCATCACCACGGGCACCAGCACC
ATTGTCCGTACCATTCCTGTGGCCACCACTCTCTCCTCCTTGGGTGCCACTCCTGGTGGG
AAGCCCACAGCCATCCACCAGCTGCTGACTAATGGGGGCCTCGCTAAGTTGGCAAGCAGC
CTCCCTGGCCTGGCTCAGATCTCTAACCAAGCAACAGGCTTGAAGGTCCCCACCACGATT
ACTCTGACACTCCGTGGCCAACCTAGCCGAATCACCACGCTGAGCCCCATGGGCTCAGGA
GCAGCCCCATCAGAGGAGCCCATTTCCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTGAAGTTGCCCACCCCCATGCAGAGCCTGGGTGCCATCACCACGGGCACCAGCACC
ATTGTCCGTACCATTCCTGTGGCCACCACTCTCTCCTCCTTGGGTGCCACTCCTGGTGGG
AAGCCCACAGCCATCCACCAGCTGCTGACTAATGGGGGCCTCGCTAAGTTGGCAAGCAGC
CTCCCTGGCCTGGCTCAGATCTCTAACCAAGCAACAGGCTTGAAGGTCCCCACCACGATT
ACTCTGACACTCCGTGGCCAACCTAGCCGAATCACCACGCTGAGCCCCATGGGCTCAGGA
GCAGCCCCATCAGAGGAGCCCATTTCCCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860628|ref|XP_592288.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860628|ref|XP_592288.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               43-218, - strand, RNAz p=0.930943

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-218, - strand, RNAz p=0.930943

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               4-218, gnl|bosTau2|chr11 (1526122-1526336)
               

               
               4-218, gnl|canFam2|chr10 (48478517-48478288)
               

               
               4-218, gnl|danRer3|chr8 (42716453-42716262)
               

               
               4-218, gnl|echTel1|scaffold_287621 (5989-6217)
               

               
               4-218, gnl|fr1|chrUn (273606534-273606328)
               

               
               4-218, gnl|galGal2|chrUn (160726422-160726197)
               

               
               4-218, gnl|hg17|chr2 (96689690-96689920)
               

               
               4-218, gnl|Hg17|chr2 (96689940-96689726)
               

               
               4-218, gnl|mm7|chr1 (36585019-36585247)
               

               
               4-218, gnl|Mm7|chr1 (36585267-36585053)
               

               
               4-218, gnl|monDom2|scaffold_1 (154181494-154181737)
               

               
               4-218, gnl|oryCun1|scaffold_207497 (42091-41866)
               

               
               4-218, gnl|panTro1|chr12 (99704205-99704435)
               

               
               4-218, gnl|rheMac2|chr13 (97019549-97019777)
               

               
               4-218, gnl|rn3|chr9 (35277515-35277743)
               

               
               4-218, gnl|tetNig1|chr12 (618637-618454)
               

               
               4-218, gnl|xenTro1|scaffold_217 (115843-116059)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-218, gnl|bosTau2|chr11 (1526122-1526336)
               

               
               4-218, gnl|canFam2|chr10 (48478517-48478288)
               

               
               4-218, gnl|danRer3|chr8 (42716453-42716262)
               

               
               4-218, gnl|echTel1|scaffold_287621 (5989-6217)
               

               
               4-218, gnl|fr1|chrUn (273606534-273606328)
               

               
               4-218, gnl|galGal2|chrUn (160726422-160726197)
               

               
               4-218, gnl|hg17|chr2 (96689690-96689920)
               

               
               4-218, gnl|Hg17|chr2 (96689940-96689726)
               

               
               4-218, gnl|mm7|chr1 (36585019-36585247)
               

               
               4-218, gnl|Mm7|chr1 (36585267-36585053)
               

               
               4-218, gnl|monDom2|scaffold_1 (154181494-154181737)
               

               
               4-218, gnl|oryCun1|scaffold_207497 (42091-41866)
               

               
               4-218, gnl|panTro1|chr12 (99704205-99704435)
               

               
               4-218, gnl|rheMac2|chr13 (97019549-97019777)
               

               
               4-218, gnl|rn3|chr9 (35277515-35277743)
               

               
               4-218, gnl|tetNig1|chr12 (618637-618454)
               

               
               4-218, gnl|xenTro1|scaffold_217 (115843-116059)

	4-218, gnl\|bosTau2\|chr11 (1526122-1526336)
	4-218, gnl\|canFam2\|chr10 (48478517-48478288)
	4-218, gnl\|danRer3\|chr8 (42716453-42716262)
	4-218, gnl\|echTel1\|scaffold_287621 (5989-6217)
	4-218, gnl\|fr1\|chrUn (273606534-273606328)
	4-218, gnl\|galGal2\|chrUn (160726422-160726197)
	4-218, gnl\|hg17\|chr2 (96689690-96689920)
	4-218, gnl\|Hg17\|chr2 (96689940-96689726)
	4-218, gnl\|mm7\|chr1 (36585019-36585247)
	4-218, gnl\|Mm7\|chr1 (36585267-36585053)
	4-218, gnl\|monDom2\|scaffold_1 (154181494-154181737)
	4-218, gnl\|oryCun1\|scaffold_207497 (42091-41866)
	4-218, gnl\|panTro1\|chr12 (99704205-99704435)
	4-218, gnl\|rheMac2\|chr13 (97019549-97019777)
	4-218, gnl\|rn3\|chr9 (35277515-35277743)
	4-218, gnl\|tetNig1\|chr12 (618637-618454)
	4-218, gnl\|xenTro1\|scaffold_217 (115843-116059)