Non-Coding RNA Search

Pig1-31G20

Sequence:


               
               GCCCACGCGTCCGCTGGTGTGGAACAGAATGGAATTTCCCATCCAACAAAAGAGGGAAGA
ATGTTTTAGGAACCAGAATTCTCTGCTGCCAGTGTTTCTCCTTCAACACAGATACCACGT
GCACACAAGTCTGCCCACTCCCAGGAAGAAAGGGGAGACCCTGAGATCTGACCTTTGGTG
GTCAGGCGTGATGGAAAGAAACTGCTGCTACAGCTTGGGAGATTTGCTCTGGAAAGTCTG
CCAGTCAACTTTGCCCTTCTAACCACCAGATCAGTATGTGGCTCATCATCTGATGGGGCA
GTTGCAGTCACCAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGCTGGTGTGGAACAGAATGGAATTTCCCATCCAACAAAAGAGGGAAGA
ATGTTTTAGGAACCAGAATTCTCTGCTGCCAGTGTTTCTCCTTCAACACAGATACCACGT
GCACACAAGTCTGCCCACTCCCAGGAAGAAAGGGGAGACCCTGAGATCTGACCTTTGGTG
GTCAGGCGTGATGGAAAGAAACTGCTGCTACAGCTTGGGAGATTTGCTCTGGAAAGTCTG
CCAGTCAACTTTGCCCTTCTAACCACCAGATCAGTATGTGGCTCATCATCTGATGGGGCA
GTTGCAGTCACCAAGCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               125-231, - strand, RNAz p=0.564809

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-231, - strand, RNAz p=0.564809

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               13-318, gnl|bosTau2|chr27 (12085753-12085453)
               

               
               13-318, gnl|canFam2|chr16 (11281576-11281301)
               

               
               13-318, gnl|echTel1|scaffold_162609 (5518-5746)
               

               
               13-318, gnl|galGal2|chr1 (53613420-53613705)
               

               
               13-318, gnl|hg17|chr7 (139879024-139879298)
               

               
               13-318, gnl|Hg17|chr7 (139879355-139879050)
               

               
               13-318, gnl|loxAfr1|scaffold_22792 (34545-34821)
               

               
               13-318, gnl|mm7|chr6 (39539949-39540224)
               

               
               13-318, gnl|Mm7|chr6 (39540281-39539973)
               

               
               13-318, gnl|monDom2|scaffold_22 (1406625-1406345)
               

               
               13-318, gnl|oryCun1|scaffold_147358 (16164-16411)
               

               
               13-318, gnl|panTro1|chr6 (142638659-142638933)
               

               
               13-318, gnl|rheMac2|chr3 (178206800-178207074)
               

               
               13-318, gnl|rn3|chr4 (67393717-67393993)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-318, gnl|bosTau2|chr27 (12085753-12085453)
               

               
               13-318, gnl|canFam2|chr16 (11281576-11281301)
               

               
               13-318, gnl|echTel1|scaffold_162609 (5518-5746)
               

               
               13-318, gnl|galGal2|chr1 (53613420-53613705)
               

               
               13-318, gnl|hg17|chr7 (139879024-139879298)
               

               
               13-318, gnl|Hg17|chr7 (139879355-139879050)
               

               
               13-318, gnl|loxAfr1|scaffold_22792 (34545-34821)
               

               
               13-318, gnl|mm7|chr6 (39539949-39540224)
               

               
               13-318, gnl|Mm7|chr6 (39540281-39539973)
               

               
               13-318, gnl|monDom2|scaffold_22 (1406625-1406345)
               

               
               13-318, gnl|oryCun1|scaffold_147358 (16164-16411)
               

               
               13-318, gnl|panTro1|chr6 (142638659-142638933)
               

               
               13-318, gnl|rheMac2|chr3 (178206800-178207074)
               

               
               13-318, gnl|rn3|chr4 (67393717-67393993)

	13-318, gnl\|bosTau2\|chr27 (12085753-12085453)
	13-318, gnl\|canFam2\|chr16 (11281576-11281301)
	13-318, gnl\|echTel1\|scaffold_162609 (5518-5746)
	13-318, gnl\|galGal2\|chr1 (53613420-53613705)
	13-318, gnl\|hg17\|chr7 (139879024-139879298)
	13-318, gnl\|Hg17\|chr7 (139879355-139879050)
	13-318, gnl\|loxAfr1\|scaffold_22792 (34545-34821)
	13-318, gnl\|mm7\|chr6 (39539949-39540224)
	13-318, gnl\|Mm7\|chr6 (39540281-39539973)
	13-318, gnl\|monDom2\|scaffold_22 (1406625-1406345)
	13-318, gnl\|oryCun1\|scaffold_147358 (16164-16411)
	13-318, gnl\|panTro1\|chr6 (142638659-142638933)
	13-318, gnl\|rheMac2\|chr3 (178206800-178207074)
	13-318, gnl\|rn3\|chr4 (67393717-67393993)