Non-Coding RNA Search

Pig1-31H14

Sequence:


               
               GCTGCGGCTTGCCATGGGGAACACCATCAGGGCCCTTGTGGCCTTCATCCCTGCTGACCG
CTGCCAGAAATACGTGGTCAGAGACCTCCAGGAGATGCCGCTGGACAAGATGGTGGATCT
GAGTGGGAACCAGCTACGCCGCTTTCCCGTGCATGTGTGCTCCTTCCAAGAGCTGGTCAA
GCTCTACCTGAGTGACAACCACCTCAACAGCCTGCCTCCGGAGCTGGGACAGCTACAGAA
TCTACAGATCCTGGCCCTGGATTTCAACAACTTCAAGGTTCTGCCCCAGGTGGTATGTAC
CTTGAAACAGCTTTGCATCCTCTACCTAGGCAACAACAAACTCTGCGACCTCCCCAGTGA
GCTGAGCCTGCTCCAGAATCTCCGGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCGGCTTGCCATGGGGAACACCATCAGGGCCCTTGTGGCCTTCATCCCTGCTGACCG
CTGCCAGAAATACGTGGTCAGAGACCTCCAGGAGATGCCGCTGGACAAGATGGTGGATCT
GAGTGGGAACCAGCTACGCCGCTTTCCCGTGCATGTGTGCTCCTTCCAAGAGCTGGTCAA
GCTCTACCTGAGTGACAACCACCTCAACAGCCTGCCTCCGGAGCTGGGACAGCTACAGAA
TCTACAGATCCTGGCCCTGGATTTCAACAACTTCAAGGTTCTGCCCCAGGTGGTATGTAC
CTTGAAACAGCTTTGCATCCTCTACCTAGGCAACAACAAACTCTGCGACCTCCCCAGTGA
GCTGAGCCTGCTCCAGAATCTCCGGACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47225771|emb|CAF98251.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47225771|emb|CAF98251.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               176-335, - strand, RNAz p=0.949559

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-335, - strand, RNAz p=0.949559

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-389, gnl|bosTau2|chr5 (28283372-28283760)
               

               
               1-389, gnl|canFam2|chr10 (14568666-14569391)
               

               
               1-389, gnl|danRer3|chr25 (24026267-24026991)
               

               
               1-389, gnl|dasNov1|scaffold_12748 (8749-9475)
               

               
               1-389, gnl|echTel1|scaffold_301015 (112531-111806)
               

               
               1-389, gnl|fr1|chrUn (6864419-6865119)
               

               
               1-389, gnl|galGal2|chr1 (32425500-32426225)
               

               
               1-389, gnl|hg17|chr12 (68290162-68290887)
               

               
               1-389, gnl|Hg17|chr12 (68290923-68290510)
               

               
               1-389, gnl|loxAfr1|scaffold_19994 (14289-15012)
               

               
               1-389, gnl|mm7|chr10 (116554033-116553308)
               

               
               1-389, gnl|Mm7|chr10 (116553279-116553683)
               

               
               1-389, gnl|monDom2|scaffold_36 (461183-461908)
               

               
               1-389, gnl|oryCun1|scaffold_170165 (36998-37723)
               

               
               1-389, gnl|panTro1|chr10 (69839169-69839894)
               

               
               1-389, gnl|rheMac2|chr11 (66597701-66598426)
               

               
               1-389, gnl|rn3|chr7 (56406943-56406218)
               

               
               1-389, gnl|tetNig1|chr13 (6357930-6358654)
               

               
               1-389, gnl|xenTro1|scaffold_405 (625568-624843)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-389, gnl|bosTau2|chr5 (28283372-28283760)
               

               
               1-389, gnl|canFam2|chr10 (14568666-14569391)
               

               
               1-389, gnl|danRer3|chr25 (24026267-24026991)
               

               
               1-389, gnl|dasNov1|scaffold_12748 (8749-9475)
               

               
               1-389, gnl|echTel1|scaffold_301015 (112531-111806)
               

               
               1-389, gnl|fr1|chrUn (6864419-6865119)
               

               
               1-389, gnl|galGal2|chr1 (32425500-32426225)
               

               
               1-389, gnl|hg17|chr12 (68290162-68290887)
               

               
               1-389, gnl|Hg17|chr12 (68290923-68290510)
               

               
               1-389, gnl|loxAfr1|scaffold_19994 (14289-15012)
               

               
               1-389, gnl|mm7|chr10 (116554033-116553308)
               

               
               1-389, gnl|Mm7|chr10 (116553279-116553683)
               

               
               1-389, gnl|monDom2|scaffold_36 (461183-461908)
               

               
               1-389, gnl|oryCun1|scaffold_170165 (36998-37723)
               

               
               1-389, gnl|panTro1|chr10 (69839169-69839894)
               

               
               1-389, gnl|rheMac2|chr11 (66597701-66598426)
               

               
               1-389, gnl|rn3|chr7 (56406943-56406218)
               

               
               1-389, gnl|tetNig1|chr13 (6357930-6358654)
               

               
               1-389, gnl|xenTro1|scaffold_405 (625568-624843)

	1-389, gnl\|bosTau2\|chr5 (28283372-28283760)
	1-389, gnl\|canFam2\|chr10 (14568666-14569391)
	1-389, gnl\|danRer3\|chr25 (24026267-24026991)
	1-389, gnl\|dasNov1\|scaffold_12748 (8749-9475)
	1-389, gnl\|echTel1\|scaffold_301015 (112531-111806)
	1-389, gnl\|fr1\|chrUn (6864419-6865119)
	1-389, gnl\|galGal2\|chr1 (32425500-32426225)
	1-389, gnl\|hg17\|chr12 (68290162-68290887)
	1-389, gnl\|Hg17\|chr12 (68290923-68290510)
	1-389, gnl\|loxAfr1\|scaffold_19994 (14289-15012)
	1-389, gnl\|mm7\|chr10 (116554033-116553308)
	1-389, gnl\|Mm7\|chr10 (116553279-116553683)
	1-389, gnl\|monDom2\|scaffold_36 (461183-461908)
	1-389, gnl\|oryCun1\|scaffold_170165 (36998-37723)
	1-389, gnl\|panTro1\|chr10 (69839169-69839894)
	1-389, gnl\|rheMac2\|chr11 (66597701-66598426)
	1-389, gnl\|rn3\|chr7 (56406943-56406218)
	1-389, gnl\|tetNig1\|chr13 (6357930-6358654)
	1-389, gnl\|xenTro1\|scaffold_405 (625568-624843)