Non-Coding RNA Search

Pig1-32B04

Sequence:


               
               GCGTGAACCCCTTCGAAGACCTCCCTGTGGTCAACGGGACCTCATTTGATGAAAACAGCT
TTGCCGCCAGACTCATTCAGCGTGGCAGCAACACCAATGCGCCTGATACGGTAACAGGAA
ATTGCCTACTCCAGCGGGCGGCTGAAGCAGGAAATGAGGCAGCAGCTCTTTTCCTGGCAA
CCAGTGGTGCCCACGTTAACCACAGAAACAAATGGGGAGAAACGCCGTTGCACACGGCCT
GTCGGCATGGCCTGGCCAACCTCACCGCAGAGCTCCTGCAGCAGGGGGCCAACCCAAACC
TGCAGACGGAGGAGGCCCTGCCTTCGCCGAAGGAGGCTGCCTCCCTGTCCGGCTCAGCGG
ACAGCAGCGTCTCCCAGCAGACGCCGCTGCACATGGCCATCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGAACCCCTTCGAAGACCTCCCTGTGGTCAACGGGACCTCATTTGATGAAAACAGCT
TTGCCGCCAGACTCATTCAGCGTGGCAGCAACACCAATGCGCCTGATACGGTAACAGGAA
ATTGCCTACTCCAGCGGGCGGCTGAAGCAGGAAATGAGGCAGCAGCTCTTTTCCTGGCAA
CCAGTGGTGCCCACGTTAACCACAGAAACAAATGGGGAGAAACGCCGTTGCACACGGCCT
GTCGGCATGGCCTGGCCAACCTCACCGCAGAGCTCCTGCAGCAGGGGGCCAACCCAAACC
TGCAGACGGAGGAGGCCCTGCCTTCGCCGAAGGAGGCTGCCTCCCTGTCCGGCTCAGCGG
ACAGCAGCGTCTCCCAGCAGACGCCGCTGCACATGGCCATCGCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               215-404, + strand, RNAz p=0.840369
               

               
               294-404, - strand, RNAz p=0.933264

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-404, + strand, RNAz p=0.840369
               

               
               294-404, - strand, RNAz p=0.933264

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               226-316, - strand, RNAmicro p=0.980114

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               226-316, - strand, RNAmicro p=0.980114

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               215-404, gnl|bosTau2|chr19 (19308581-19308392)
               

               
               215-404, gnl|canFam2|chr5 (33256304-33256553)
               

               
               215-404, gnl|danRer3|chr5 (26072385-26072616)
               

               
               215-404, gnl|dasNov1|scaffold_15218 (37074-36825)
               

               
               215-404, gnl|echTel1|scaffold_318100 (164349-164590)
               

               
               215-404, gnl|fr1|chrUn (222943169-222943390)
               

               
               215-404, gnl|galGal2|chr19 (2944460-2944214)
               

               
               215-404, gnl|hg17|chr17 (4034856-4035105)
               

               
               215-404, gnl|Hg17|chr17 (4035091-4034905)
               

               
               215-404, gnl|mm7|chr11 (72831110-72830862)
               

               
               215-404, gnl|Mm7|chr11 (72830873-72831059)
               

               
               215-404, gnl|monDom2|scaffold_310 (49539-49291)
               

               
               215-404, gnl|oryCun1|scaffold_202586 (48488-48736)
               

               
               215-404, gnl|panTro1|chr19 (4338185-4338434)
               

               
               215-404, gnl|rheMac2|chr16 (3913011-3913260)
               

               
               215-404, gnl|rn3|chr10 (59648719-59648471)
               

               
               215-404, gnl|tetNig1|chr7 (1679551-1679339)
               

               
               215-404, gnl|xenTro1|scaffold_21 (2346185-2346431)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-404, gnl|bosTau2|chr19 (19308581-19308392)
               

               
               215-404, gnl|canFam2|chr5 (33256304-33256553)
               

               
               215-404, gnl|danRer3|chr5 (26072385-26072616)
               

               
               215-404, gnl|dasNov1|scaffold_15218 (37074-36825)
               

               
               215-404, gnl|echTel1|scaffold_318100 (164349-164590)
               

               
               215-404, gnl|fr1|chrUn (222943169-222943390)
               

               
               215-404, gnl|galGal2|chr19 (2944460-2944214)
               

               
               215-404, gnl|hg17|chr17 (4034856-4035105)
               

               
               215-404, gnl|Hg17|chr17 (4035091-4034905)
               

               
               215-404, gnl|mm7|chr11 (72831110-72830862)
               

               
               215-404, gnl|Mm7|chr11 (72830873-72831059)
               

               
               215-404, gnl|monDom2|scaffold_310 (49539-49291)
               

               
               215-404, gnl|oryCun1|scaffold_202586 (48488-48736)
               

               
               215-404, gnl|panTro1|chr19 (4338185-4338434)
               

               
               215-404, gnl|rheMac2|chr16 (3913011-3913260)
               

               
               215-404, gnl|rn3|chr10 (59648719-59648471)
               

               
               215-404, gnl|tetNig1|chr7 (1679551-1679339)
               

               
               215-404, gnl|xenTro1|scaffold_21 (2346185-2346431)

	215-404, + strand, RNAz p=0.840369
	294-404, - strand, RNAz p=0.933264

	215-404, gnl\|bosTau2\|chr19 (19308581-19308392)
	215-404, gnl\|canFam2\|chr5 (33256304-33256553)
	215-404, gnl\|danRer3\|chr5 (26072385-26072616)
	215-404, gnl\|dasNov1\|scaffold_15218 (37074-36825)
	215-404, gnl\|echTel1\|scaffold_318100 (164349-164590)
	215-404, gnl\|fr1\|chrUn (222943169-222943390)
	215-404, gnl\|galGal2\|chr19 (2944460-2944214)
	215-404, gnl\|hg17\|chr17 (4034856-4035105)
	215-404, gnl\|Hg17\|chr17 (4035091-4034905)
	215-404, gnl\|mm7\|chr11 (72831110-72830862)
	215-404, gnl\|Mm7\|chr11 (72830873-72831059)
	215-404, gnl\|monDom2\|scaffold_310 (49539-49291)
	215-404, gnl\|oryCun1\|scaffold_202586 (48488-48736)
	215-404, gnl\|panTro1\|chr19 (4338185-4338434)
	215-404, gnl\|rheMac2\|chr16 (3913011-3913260)
	215-404, gnl\|rn3\|chr10 (59648719-59648471)
	215-404, gnl\|tetNig1\|chr7 (1679551-1679339)
	215-404, gnl\|xenTro1\|scaffold_21 (2346185-2346431)