Non-Coding RNA Search

Pig1-32O15

Sequence:


               
               GAGACAATGGGTCATATATCTGTAAGATGAAAATCAACAATGAAGAAATCGTGTCTGACC
CCATCTACGTCGAAGTTCAAGGACTTCCTCACTTTACGAGGCAGCCTGAGAGTATGAATG
TCACCAAAAACACAGCCTTCAACCTCACCTGTCAGGCTGTGGGCCCGCCCGAGCCCGTCA
ACATTTTCTGGGTTCAGAACAGCAGCCGTGTTAATGAACTTCCAGAAAAATCCCCCTCCG
TCCTGACTGTTCCTGGTCTGACCGAGACCGCCATCTTCAGCTGTGAAGCCCATAATGACA
AAGGGCTGACCGTGTCCAAGGGCATCCAGATCAACATCAAAGCAATTCCTTCCCCACCAT
CTGAAGTCAGGGTCCACAACAGTACTGCACACAGCATCCTGATCTCCTGGCTCCCTGGTT
TCGATGGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACAATGGGTCATATATCTGTAAGATGAAAATCAACAATGAAGAAATCGTGTCTGACC
CCATCTACGTCGAAGTTCAAGGACTTCCTCACTTTACGAGGCAGCCTGAGAGTATGAATG
TCACCAAAAACACAGCCTTCAACCTCACCTGTCAGGCTGTGGGCCCGCCCGAGCCCGTCA
ACATTTTCTGGGTTCAGAACAGCAGCCGTGTTAATGAACTTCCAGAAAAATCCCCCTCCG
TCCTGACTGTTCCTGGTCTGACCGAGACCGCCATCTTCAGCTGTGAAGCCCATAATGACA
AAGGGCTGACCGTGTCCAAGGGCATCCAGATCAACATCAAAGCAATTCCTTCCCCACCAT
CTGAAGTCAGGGTCCACAACAGTACTGCACACAGCATCCTGATCTCCTGGCTCCCTGGTT
TCGATGGATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               80-171, - strand, RNAz p=0.584341

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-171, - strand, RNAz p=0.584341

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               80-257, gnl|bosTau2|chr11 (2280336-2280159)
               

               
               80-257, gnl|canFam2|chr17 (39489195-39489443)
               

               
               80-257, gnl|echTel1|scaffold_281721 (795-552)
               

               
               80-257, gnl|galGal2|chr3 (3104907-3105147)
               

               
               80-257, gnl|hg17|chr2 (112421136-112421384)
               

               
               80-257, gnl|Hg17|chr2 (112421200-112421377)
               

               
               80-257, gnl|loxAfr1|scaffold_28277 (20775-21020)
               

               
               80-257, gnl|mm7|chr2 (128478995-128479231)
               

               
               80-257, gnl|Mm7|chr2 (128479047-128479224)
               

               
               80-257, gnl|monDom2|scaffold_1 (63776445-63776209)
               

               
               80-257, gnl|oryCun1|scaffold_214968 (144749-144502)
               

               
               80-257, gnl|panTro1|chr12 (115553740-115553988)
               

               
               80-257, gnl|rheMac2|chr13 (111361922-111362170)
               

               
               80-257, gnl|rn3|chr3 (116253499-116253738)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-257, gnl|bosTau2|chr11 (2280336-2280159)
               

               
               80-257, gnl|canFam2|chr17 (39489195-39489443)
               

               
               80-257, gnl|echTel1|scaffold_281721 (795-552)
               

               
               80-257, gnl|galGal2|chr3 (3104907-3105147)
               

               
               80-257, gnl|hg17|chr2 (112421136-112421384)
               

               
               80-257, gnl|Hg17|chr2 (112421200-112421377)
               

               
               80-257, gnl|loxAfr1|scaffold_28277 (20775-21020)
               

               
               80-257, gnl|mm7|chr2 (128478995-128479231)
               

               
               80-257, gnl|Mm7|chr2 (128479047-128479224)
               

               
               80-257, gnl|monDom2|scaffold_1 (63776445-63776209)
               

               
               80-257, gnl|oryCun1|scaffold_214968 (144749-144502)
               

               
               80-257, gnl|panTro1|chr12 (115553740-115553988)
               

               
               80-257, gnl|rheMac2|chr13 (111361922-111362170)
               

               
               80-257, gnl|rn3|chr3 (116253499-116253738)

	80-257, gnl\|bosTau2\|chr11 (2280336-2280159)
	80-257, gnl\|canFam2\|chr17 (39489195-39489443)
	80-257, gnl\|echTel1\|scaffold_281721 (795-552)
	80-257, gnl\|galGal2\|chr3 (3104907-3105147)
	80-257, gnl\|hg17\|chr2 (112421136-112421384)
	80-257, gnl\|Hg17\|chr2 (112421200-112421377)
	80-257, gnl\|loxAfr1\|scaffold_28277 (20775-21020)
	80-257, gnl\|mm7\|chr2 (128478995-128479231)
	80-257, gnl\|Mm7\|chr2 (128479047-128479224)
	80-257, gnl\|monDom2\|scaffold_1 (63776445-63776209)
	80-257, gnl\|oryCun1\|scaffold_214968 (144749-144502)
	80-257, gnl\|panTro1\|chr12 (115553740-115553988)
	80-257, gnl\|rheMac2\|chr13 (111361922-111362170)
	80-257, gnl\|rn3\|chr3 (116253499-116253738)