Non-Coding RNA Search

Pig1-37H06

Sequence:


               
               GGGGATGTGGGAGGTGGGAGGGGTGGGGGAGGAAACTAAACCTGCAGAGCGTGCCACCTG
TGAAGACACTCCCCTCCAGGCTGTCCCCCAGCTGGAAGGTAGGGTCTGGCAGGGGCCCAC
ACTAAGCACAGAAGGTAGTGGGCAGGGGCGCCCTGGGCCTGGGGCCGGGGCGAGAAAGCT
GAGCCCCACGTGAGCACCTTGGGGACTTTGACGATAGACTCCGTGCCATTTGGGACAGGC
CATGTGGGAAAATCCAATTTGTGCCTTGGCTGCAAATCTGGAAAAGATGTGGTTGTGGGG
GCCTCCCGTGCCCTGCCCCTGCCTAGCCTGGTTTCAGTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGATGTGGGAGGTGGGAGGGGTGGGGGAGGAAACTAAACCTGCAGAGCGTGCCACCTG
TGAAGACACTCCCCTCCAGGCTGTCCCCCAGCTGGAAGGTAGGGTCTGGCAGGGGCCCAC
ACTAAGCACAGAAGGTAGTGGGCAGGGGCGCCCTGGGCCTGGGGCCGGGGCGAGAAAGCT
GAGCCCCACGTGAGCACCTTGGGGACTTTGACGATAGACTCCGTGCCATTTGGGACAGGC
CATGTGGGAAAATCCAATTTGTGCCTTGGCTGCAAATCTGGAAAAGATGTGGTTGTGGGG
GCCTCCCGTGCCCTGCCCCTGCCTAGCCTGGTTTCAGTTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               125-241, - strand, RNAz p=0.534397

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-241, - strand, RNAz p=0.534397

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               86-341, gnl|bosTau2|chr26 (15824037-15824293)
               

               
               86-341, gnl|canFam2|chr28 (18945880-18946367)
               

               
               86-341, gnl|dasNov1|scaffold_25247 (11534-12008)
               

               
               86-341, gnl|echTel1|scaffold_162566 (1104-680)
               

               
               86-341, gnl|hg17|chr10 (105350841-105351326)
               

               
               86-341, gnl|Hg17|chr10 (105351394-105351140)
               

               
               86-341, gnl|loxAfr1|scaffold_18125 (19230-18784)
               

               
               86-341, gnl|mm7|chr19 (47166831-47167268)
               

               
               86-341, gnl|Mm7|chr19 (47167335-47167114)
               

               
               86-341, gnl|monDom2|scaffold_14 (59696030-59695369)
               

               
               86-341, gnl|oryCun1|scaffold_204584 (10202-10605)
               

               
               86-341, gnl|panTro1|chr8 (107130104-107130589)
               

               
               86-341, gnl|rheMac2|chr9 (103298875-103299361)
               

               
               86-341, gnl|rn3|chr1 (252865149-252865570)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-341, gnl|bosTau2|chr26 (15824037-15824293)
               

               
               86-341, gnl|canFam2|chr28 (18945880-18946367)
               

               
               86-341, gnl|dasNov1|scaffold_25247 (11534-12008)
               

               
               86-341, gnl|echTel1|scaffold_162566 (1104-680)
               

               
               86-341, gnl|hg17|chr10 (105350841-105351326)
               

               
               86-341, gnl|Hg17|chr10 (105351394-105351140)
               

               
               86-341, gnl|loxAfr1|scaffold_18125 (19230-18784)
               

               
               86-341, gnl|mm7|chr19 (47166831-47167268)
               

               
               86-341, gnl|Mm7|chr19 (47167335-47167114)
               

               
               86-341, gnl|monDom2|scaffold_14 (59696030-59695369)
               

               
               86-341, gnl|oryCun1|scaffold_204584 (10202-10605)
               

               
               86-341, gnl|panTro1|chr8 (107130104-107130589)
               

               
               86-341, gnl|rheMac2|chr9 (103298875-103299361)
               

               
               86-341, gnl|rn3|chr1 (252865149-252865570)

	86-341, gnl\|bosTau2\|chr26 (15824037-15824293)
	86-341, gnl\|canFam2\|chr28 (18945880-18946367)
	86-341, gnl\|dasNov1\|scaffold_25247 (11534-12008)
	86-341, gnl\|echTel1\|scaffold_162566 (1104-680)
	86-341, gnl\|hg17\|chr10 (105350841-105351326)
	86-341, gnl\|Hg17\|chr10 (105351394-105351140)
	86-341, gnl\|loxAfr1\|scaffold_18125 (19230-18784)
	86-341, gnl\|mm7\|chr19 (47166831-47167268)
	86-341, gnl\|Mm7\|chr19 (47167335-47167114)
	86-341, gnl\|monDom2\|scaffold_14 (59696030-59695369)
	86-341, gnl\|oryCun1\|scaffold_204584 (10202-10605)
	86-341, gnl\|panTro1\|chr8 (107130104-107130589)
	86-341, gnl\|rheMac2\|chr9 (103298875-103299361)
	86-341, gnl\|rn3\|chr1 (252865149-252865570)