Non-Coding RNA Search

Pig1-37H17

Sequence:


               
               GGATGGGGGCCTGGAGACTCTGCGCCTGAAGCTGCCTGCTGTGGTGACCGCTGACCTGCG
GCTCAATGAGCCCCGCTATGCAACGTTGCCCAATATCATGAAAGCCAAGAAGAAGAAGAT
CGAGGTGATTAAGGCAGGGGACCTGGGCGTGGACCTGACCTCCAAGCTCTCCGTGATTAG
CGTGGAAGACCCGCCCCAGCGCACAGCCGGTGTCAAGGTGGAGACCACAGAGGACCTGGT
GGCCAAACTGAAGGAGATTGGGCGCATCTGAGCCCCTTCCCTGAAACCCAGCAATAAAGC
CATGACTCTTCTGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGGGGCCTGGAGACTCTGCGCCTGAAGCTGCCTGCTGTGGTGACCGCTGACCTGCG
GCTCAATGAGCCCCGCTATGCAACGTTGCCCAATATCATGAAAGCCAAGAAGAAGAAGAT
CGAGGTGATTAAGGCAGGGGACCTGGGCGTGGACCTGACCTCCAAGCTCTCCGTGATTAG
CGTGGAAGACCCGCCCCAGCGCACAGCCGGTGTCAAGGTGGAGACCACAGAGGACCTGGT
GGCCAAACTGAAGGAGATTGGGCGCATCTGAGCCCCTTCCCTGAAACCCAGCAATAAAGC
CATGACTCTTCTGAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               139-258, - strand, RNAz p=0.584624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-258, - strand, RNAz p=0.584624

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               150-273, - strand, RNAmicro p=0.999354

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               150-273, - strand, RNAmicro p=0.999354

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-314, gnl|bosTau2|chr18 (50735946-50735732)
               

               
               100-314, gnl|Hg17|chr19 (56540448-56540241)
               

               
               100-314, gnl|Mm7|chr7 (39633139-39633352)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-314, gnl|bosTau2|chr18 (50735946-50735732)
               

               
               100-314, gnl|Hg17|chr19 (56540448-56540241)
               

               
               100-314, gnl|Mm7|chr7 (39633139-39633352)

	100-314, gnl\|bosTau2\|chr18 (50735946-50735732)
	100-314, gnl\|Hg17\|chr19 (56540448-56540241)
	100-314, gnl\|Mm7\|chr7 (39633139-39633352)