Non-Coding RNA Search

Pig1-38N12

Sequence:


               
               CCAGGAGTGTCCAGTGGGTGCCCAGGCTACCTGTGGACAGTTTGCCAGCGATGTTCAGTT
TGTCCTGAGGCGGACAGGACCCAGCCTGGCTGGGAGGCCCTCCTCGGACAGCTGCCCACC
CCCTGAGCGCTGCCCCATCCGAGCCAGCCTTCCCCCAAAGCCTCGACCAGCATTGGACCG
TGAGCCCCGCAAAGCCCTGACCTTCAGCCTGGGGTGTCCTGGGCCAGCCCCCAGCCCTGT
GCCACTTGAGCCTGTGGCTTCAGTGGCACCAATGCCAGGCTGCTGCACAGACCTGCAGGG
CTGGGAGCGAAGGGTGCGGAGGAACGCAGCAGAGCTGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGAGTGTCCAGTGGGTGCCCAGGCTACCTGTGGACAGTTTGCCAGCGATGTTCAGTT
TGTCCTGAGGCGGACAGGACCCAGCCTGGCTGGGAGGCCCTCCTCGGACAGCTGCCCACC
CCCTGAGCGCTGCCCCATCCGAGCCAGCCTTCCCCCAAAGCCTCGACCAGCATTGGACCG
TGAGCCCCGCAAAGCCCTGACCTTCAGCCTGGGGTGTCCTGGGCCAGCCCCCAGCCCTGT
GCCACTTGAGCCTGTGGCTTCAGTGGCACCAATGCCAGGCTGCTGCACAGACCTGCAGGG
CTGGGAGCGAAGGGTGCGGAGGAACGCAGCAGAGCTGGGCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.586359
               

               
               200-341, - strand, RNAz p=0.99982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.586359
               

               
               200-341, - strand, RNAz p=0.99982

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               36-335, - strand, RNAmicro p=0.999977
               

               
               245-339, + strand, RNAmicro p=0.906569

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               36-335, - strand, RNAmicro p=0.999977
               

               
               245-339, + strand, RNAmicro p=0.906569

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-341, gnl|bosTau2|chr29 (45753214-45753554)
               

               
               1-341, gnl|Hg17|chr11 (552140-552465)
               

               
               1-341, gnl|Mm7|chr7 (137634324-137634664)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-341, gnl|bosTau2|chr29 (45753214-45753554)
               

               
               1-341, gnl|Hg17|chr11 (552140-552465)
               

               
               1-341, gnl|Mm7|chr7 (137634324-137634664)

	1-119, - strand, RNAz p=0.586359
	200-341, - strand, RNAz p=0.99982

	36-335, - strand, RNAmicro p=0.999977
	245-339, + strand, RNAmicro p=0.906569

	1-341, gnl\|bosTau2\|chr29 (45753214-45753554)
	1-341, gnl\|Hg17\|chr11 (552140-552465)
	1-341, gnl\|Mm7\|chr7 (137634324-137634664)