Non-Coding RNA Search

Pig1-3C09

Sequence:


               
               GATGTAAGAAGGTGACACAGCCCCGCGATTCCTCCATTGGTCCAGGCGTGGGCATCAGCA
GCGTTCCCCATGTACCGCTGTGTGCCTGGCCCTGAGTTGGGTGCTGGGGGACCTCCCTTG
GTCCATGCAAAGGAGTGCCGCACAGCCACAGAGGGACAGCAGCTGCCTCTGCCTAAGACA
GGGCACATTTGAGTAGGGTGTTGAAGGGTTCATAGGAGTTTGCCAGGTAGGCCACAACCT
GAGCTGGCACCTCAGCTGCTGCTGCTTTTCGTGCTGCTGTTTTTCAGTTTCTCAGATTCA
GAGGTGGTGGCCCCATGGGTTTGAGCCCTGAGTGCTTGAGGCCCAGTGATGTATTTTTAA
TGTAATAAACCTTTATTGAGCACCTCCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTAAGAAGGTGACACAGCCCCGCGATTCCTCCATTGGTCCAGGCGTGGGCATCAGCA
GCGTTCCCCATGTACCGCTGTGTGCCTGGCCCTGAGTTGGGTGCTGGGGGACCTCCCTTG
GTCCATGCAAAGGAGTGCCGCACAGCCACAGAGGGACAGCAGCTGCCTCTGCCTAAGACA
GGGCACATTTGAGTAGGGTGTTGAAGGGTTCATAGGAGTTTGCCAGGTAGGCCACAACCT
GAGCTGGCACCTCAGCTGCTGCTGCTTTTCGTGCTGCTGTTTTTCAGTTTCTCAGATTCA
GAGGTGGTGGCCCCATGGGTTTGAGCCCTGAGTGCTTGAGGCCCAGTGATGTATTTTTAA
TGTAATAAACCTTTATTGAGCACCTCCAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               228-345, + strand, RNAz p=0.531685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-345, + strand, RNAz p=0.531685

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC001132, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC001132, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-388, gnl|bosTau2|chr17 (37852662-37853047)
               

               
               1-388, gnl|Hg17|chr12 (112059408-112059015)
               

               
               1-388, gnl|Mm7|chr5 (119861272-119861610)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-388, gnl|bosTau2|chr17 (37852662-37853047)
               

               
               1-388, gnl|Hg17|chr12 (112059408-112059015)
               

               
               1-388, gnl|Mm7|chr5 (119861272-119861610)

	1-388, gnl\|bosTau2\|chr17 (37852662-37853047)
	1-388, gnl\|Hg17\|chr12 (112059408-112059015)
	1-388, gnl\|Mm7\|chr5 (119861272-119861610)