Non-Coding RNA Search

Pig1-3D09

Sequence:


               
               AATTCCATGAATATCAGACACACTCCTATTCAAGTAAAATCACAAAATCATCTTTCAAAA
CTAAATAATTAAAAAATAACTAAATAACTTCATCATTCTGAATTCTATAGTTCTATTTCC
CTCTATAAGAATAAACTCTTTTTAAACTAAATACTGAGAGAACACAGACTAAAACCACTT
CACAGATAGTATGAAGAGGAAATGAGGTAATGAAAATACTTTGGAAATTAGAGAAGTCAT
CGATGCAAAATATTTTTACCTCAAATTTCAGTTTGAAGCACAGATAATTTTACATGTTGA
ATCAGAACAGAAAATAGAAAACAAAAGATGCAGTAATGTTCTAATAGATTCAGGATAAAT
GACATTTTTTTGAGTAAACGGAGTATGTTATAATCTTATTTTGTAGATTAGAGCAAAAAT
ATTAACTATTCACCATTACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCCATGAATATCAGACACACTCCTATTCAAGTAAAATCACAAAATCATCTTTCAAAA
CTAAATAATTAAAAAATAACTAAATAACTTCATCATTCTGAATTCTATAGTTCTATTTCC
CTCTATAAGAATAAACTCTTTTTAAACTAAATACTGAGAGAACACAGACTAAAACCACTT
CACAGATAGTATGAAGAGGAAATGAGGTAATGAAAATACTTTGGAAATTAGAGAAGTCAT
CGATGCAAAATATTTTTACCTCAAATTTCAGTTTGAAGCACAGATAATTTTACATGTTGA
ATCAGAACAGAAAATAGAAAACAAAAGATGCAGTAATGTTCTAATAGATTCAGGATAAAT
GACATTTTTTTGAGTAAACGGAGTATGTTATAATCTTATTTTGTAGATTAGAGCAAAAAT
ATTAACTATTCACCATTACTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               168-285, - strand, RNAz p=0.876099

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-285, - strand, RNAz p=0.876099

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-402, gnl|bosTau2|chr11 (30048991-30048590)
               

               
               1-402, gnl|Hg17|chr2 (61105634-61105260)
               

               
               1-402, gnl|Mm7|chr11 (23656843-23657345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-402, gnl|bosTau2|chr11 (30048991-30048590)
               

               
               1-402, gnl|Hg17|chr2 (61105634-61105260)
               

               
               1-402, gnl|Mm7|chr11 (23656843-23657345)

	1-402, gnl\|bosTau2\|chr11 (30048991-30048590)
	1-402, gnl\|Hg17\|chr2 (61105634-61105260)
	1-402, gnl\|Mm7\|chr11 (23656843-23657345)