Pig1-3O12
|
GCCCGCTGGCTGTTTCCAAGGCCTTCTTCATTATTCAAACCACGACTCCATCACAGGAAT
ACCCAAAGCAACATTTGATAGTTGTGGAAGATTTTTACCCTCACAAGTCATGAATACTTT
CTGTTTATCGCTTACACTGAGGATTTATGACTATCTAAGTGTTGTATTTCCGAAGGGAAG
CATCCTATCCTCAGATCCATTCTGCTCACGTCAGAATACCTTTGAAGACTAGGCACTTAT
TATTTCTACAATGAATCTGTTTCCTCCAGACTCCCGGCTGTCACCGTCCTGACCTGCCAC
CTGTGTCACATCCCATCAAGTGCTGTGGATGAGCCAGGTACCAGTAAACCAGCCCCCGAG
GCTGGAGAAATGTTGGATGTAGATGCTCACAGAATCATTCATCAAATCTTGGAAGCTTCG
GAGAGAAGTGCGTAAAATGAAAATTTAGTTCCAGAGAAATAGAGCCTCAATTTAATACCA
TCTACCAAAGCACTGCCACGTCTGTCATCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCCGCTGGCTGTTTCCAAGGCCTTCTTCATTATTCAAACCACGACTCCATCACAGGAAT
ACCCAAAGCAACATTTGATAGTTGTGGAAGATTTTTACCCTCACAAGTCATGAATACTTT
CTGTTTATCGCTTACACTGAGGATTTATGACTATCTAAGTGTTGTATTTCCGAAGGGAAG
CATCCTATCCTCAGATCCATTCTGCTCACGTCAGAATACCTTTGAAGACTAGGCACTTAT
TATTTCTACAATGAATCTGTTTCCTCCAGACTCCCGGCTGTCACCGTCCTGACCTGCCAC
CTGTGTCACATCCCATCAAGTGCTGTGGATGAGCCAGGTACCAGTAAACCAGCCCCCGAG
GCTGGAGAAATGTTGGATGTAGATGCTCACAGAATCATTCATCAAATCTTGGAAGCTTCG
GAGAGAAGTGCGTAAAATGAAAATTTAGTTCCAGAGAAATAGAGCCTCAATTTAATACCA
TCTACCAAAGCACTGCCACGTCTGTCATCTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
70-184, + strand, RNAmicro p=0.999871 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
70-184, + strand, RNAmicro p=0.999871 |
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1-170, gnl|bosTau2|chr27 (17373096-17372927) |
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1-170, gnl|canFam2|chr16 (38121685-38121059) |
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1-170, gnl|echTel1|scaffold_295482 (16933-17588) |
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1-170, gnl|hg17|chr8 (9274584-9275212) |
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1-170, gnl|Hg17|chr8 (9275240-9275058) |
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1-170, gnl|loxAfr1|scaffold_53759 (5392-6174) |
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1-170, gnl|mm7|chr8 (33909315-33908751) |
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1-170, gnl|Mm7|chr8 (33908721-33908895) |
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1-170, gnl|oryCun1|scaffold_205642 (51149-51767) |
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1-170, gnl|panTro1|chr7 (9907801-9908431) |
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1-170, gnl|rheMac2|chr8 (11331177-11330571) |
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1-170, gnl|rn3|chr16 (60782614-60783165) |
| |
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332-509, gnl|bosTau2|chr27 (17368981-17368806) |
|
332-509, gnl|Hg17|chr8 (9266343-9266166) |
|
332-509, gnl|Mm7|chr8 (33920002-33920155) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-170, gnl|bosTau2|chr27 (17373096-17372927) |
|
1-170, gnl|canFam2|chr16 (38121685-38121059) |
|
1-170, gnl|echTel1|scaffold_295482 (16933-17588) |
|
1-170, gnl|hg17|chr8 (9274584-9275212) |
|
1-170, gnl|Hg17|chr8 (9275240-9275058) |
|
1-170, gnl|loxAfr1|scaffold_53759 (5392-6174) |
|
1-170, gnl|mm7|chr8 (33909315-33908751) |
|
1-170, gnl|Mm7|chr8 (33908721-33908895) |
|
1-170, gnl|oryCun1|scaffold_205642 (51149-51767) |
|
1-170, gnl|panTro1|chr7 (9907801-9908431) |
|
1-170, gnl|rheMac2|chr8 (11331177-11330571) |
|
1-170, gnl|rn3|chr16 (60782614-60783165) |
| |
|
332-509, gnl|bosTau2|chr27 (17368981-17368806) |
|
332-509, gnl|Hg17|chr8 (9266343-9266166) |
|
332-509, gnl|Mm7|chr8 (33920002-33920155) |
