Non-Coding RNA Search

Pig1-40A13

Sequence:


               
               GCCCACGCGTCCGCAAAGGGGTTATGGGACGGGAGACAGCTGGGGAGAGAGTCAGGGCCT
GGGGGATGGAAGTTCTGGATGTCCGAACGAGAAAGGGAAAGAGGGACAAGGAGGGAGGAA
TTAGGTCCTAAGGAGTTAACCATCCTCTCTCCACCCGAGCCGATCGCTCCGTCCCTAGAG
CTACCCAGTGTAAACCAGACCGAGTCCCGAAGGACTGGGAGAGGTCTAAAACGAAATCCG
AGGGGCGCGCGCCGGGTCGGGGGGAAATGGGGGGCGTGGTTCTGGGGAGCAAGCGCCACA
CTGGGAGCCAAGATCGTCCCCCAATCTCGAGATCTCTCTTCCCCAAAGTCCACCCCGACT
CAGCTCCGCACCCAAATATCAACTCTCCGCACTGTCTGGTGCAAGCAGGGGCCCAGCACC
CCCAAACTCCGGCTCACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGCAAAGGGGTTATGGGACGGGAGACAGCTGGGGAGAGAGTCAGGGCCT
GGGGGATGGAAGTTCTGGATGTCCGAACGAGAAAGGGAAAGAGGGACAAGGAGGGAGGAA
TTAGGTCCTAAGGAGTTAACCATCCTCTCTCCACCCGAGCCGATCGCTCCGTCCCTAGAG
CTACCCAGTGTAAACCAGACCGAGTCCCGAAGGACTGGGAGAGGTCTAAAACGAAATCCG
AGGGGCGCGCGCCGGGTCGGGGGGAAATGGGGGGCGTGGTTCTGGGGAGCAAGCGCCACA
CTGGGAGCCAAGATCGTCCCCCAATCTCGAGATCTCTCTTCCCCAAAGTCCACCCCGACT
CAGCTCCGCACCCAAATATCAACTCTCCGCACTGTCTGGTGCAAGCAGGGGCCCAGCACC
CCCAAACTCCGGCTCACACA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               50-166, - strand, RNAz p=0.997382
               

               
               62-282, - strand, RNAz p=0.993504
               

               
               247-364, - strand, RNAz p=0.734171

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-166, - strand, RNAz p=0.997382
               

               
               62-282, - strand, RNAz p=0.993504
               

               
               247-364, - strand, RNAz p=0.734171

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               284-408, - strand, RNAmicro p=0.935662

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               284-408, - strand, RNAmicro p=0.935662

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               14-439, gnl|bosTau2|chr23 (23377761-23378180)
               

               
               14-439, gnl|canFam2|chr12 (4211678-4212438)
               

               
               14-439, gnl|echTel1|scaffold_303864 (86089-86845)
               

               
               14-439, gnl|hg17|chr6 (31804947-31805700)
               

               
               14-439, gnl|Hg17|chr6 (31805371-31805778)
               

               
               14-439, gnl|loxAfr1|scaffold_190646 (1001-255)
               

               
               14-439, gnl|mm7|chr17 (33157225-33156477)
               

               
               14-439, gnl|Mm7|chr17 (33156803-33156395)
               

               
               14-439, gnl|monDom2|scaffold_42 (17666245-17665475)
               

               
               14-439, gnl|oryCun1|scaffold_198577 (95931-96655)
               

               
               14-439, gnl|panTro1|chr5 (32207643-32208393)
               

               
               14-439, gnl|rheMac2|chr4 (31374549-31375304)
               

               
               14-439, gnl|rn3|chr20 (3497747-3498505)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-439, gnl|bosTau2|chr23 (23377761-23378180)
               

               
               14-439, gnl|canFam2|chr12 (4211678-4212438)
               

               
               14-439, gnl|echTel1|scaffold_303864 (86089-86845)
               

               
               14-439, gnl|hg17|chr6 (31804947-31805700)
               

               
               14-439, gnl|Hg17|chr6 (31805371-31805778)
               

               
               14-439, gnl|loxAfr1|scaffold_190646 (1001-255)
               

               
               14-439, gnl|mm7|chr17 (33157225-33156477)
               

               
               14-439, gnl|Mm7|chr17 (33156803-33156395)
               

               
               14-439, gnl|monDom2|scaffold_42 (17666245-17665475)
               

               
               14-439, gnl|oryCun1|scaffold_198577 (95931-96655)
               

               
               14-439, gnl|panTro1|chr5 (32207643-32208393)
               

               
               14-439, gnl|rheMac2|chr4 (31374549-31375304)
               

               
               14-439, gnl|rn3|chr20 (3497747-3498505)

	50-166, - strand, RNAz p=0.997382
	62-282, - strand, RNAz p=0.993504
	247-364, - strand, RNAz p=0.734171

	14-439, gnl\|bosTau2\|chr23 (23377761-23378180)
	14-439, gnl\|canFam2\|chr12 (4211678-4212438)
	14-439, gnl\|echTel1\|scaffold_303864 (86089-86845)
	14-439, gnl\|hg17\|chr6 (31804947-31805700)
	14-439, gnl\|Hg17\|chr6 (31805371-31805778)
	14-439, gnl\|loxAfr1\|scaffold_190646 (1001-255)
	14-439, gnl\|mm7\|chr17 (33157225-33156477)
	14-439, gnl\|Mm7\|chr17 (33156803-33156395)
	14-439, gnl\|monDom2\|scaffold_42 (17666245-17665475)
	14-439, gnl\|oryCun1\|scaffold_198577 (95931-96655)
	14-439, gnl\|panTro1\|chr5 (32207643-32208393)
	14-439, gnl\|rheMac2\|chr4 (31374549-31375304)
	14-439, gnl\|rn3\|chr20 (3497747-3498505)