Non-Coding RNA Search

Pig1-41M02

Sequence:


               
               gctgccggtctacaccccagccacagcaacatcggatccgagccacatctatgacctccc
cacagctcatggcaacgccggttccttaacccactgagggaggccagggatcgaacccgc
aacctcagggttcctagtcgaattgtttccactgcgccatgacaggaactccCATCTGCC
CTCCTGACTCTTCTCTTTCATTCAACTGGAAATGCCCTCAGGGTCAAGACAATGACTCTT
CTACCCACACCCTCGGCACCAGCCCTGGTGTCTGACACAAAATAGACAATAAATATTTGT
TGGATGAATGACCAGAGGAAAACAATCGCTCCAGTTGTAAGAACACTTGCTGAGCACTGT
GCTAAATCATTGACATGGATTTTTTCATTACAGGTGGGTCCTGCCATTAATCCCATTTTG
CAGATGTGTTAATTGTTCCAGTTGCTCAACTGGAATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               gctgccggtctacaccccagccacagcaacatcggatccgagccacatctatgacctccc
cacagctcatggcaacgccggttccttaacccactgagggaggccagggatcgaacccgc
aacctcagggttcctagtcgaattgtttccactgcgccatgacaggaactccCATCTGCC
CTCCTGACTCTTCTCTTTCATTCAACTGGAAATGCCCTCAGGGTCAAGACAATGACTCTT
CTACCCACACCCTCGGCACCAGCCCTGGTGTCTGACACAAAATAGACAATAAATATTTGT
TGGATGAATGACCAGAGGAAAACAATCGCTCCAGTTGTAAGAACACTTGCTGAGCACTGT
GCTAAATCATTGACATGGATTTTTTCATTACAGGTGGGTCCTGCCATTAATCCCATTTTG
CAGATGTGTTAATTGTTCCAGTTGCTCAACTGGAATATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               244-362, - strand, RNAz p=0.972399

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-362, - strand, RNAz p=0.972399

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               244-435, gnl|bosTau2|chr12 (45139589-45139780)
               

               
               244-435, gnl|canFam2|chr22 (58465501-58465608)
               

               
               244-435, gnl|hg17|chr13 (105885997-105886128)
               

               
               244-435, gnl|Hg17|chr13 (105885996-105886176)
               

               
               244-435, gnl|oryCun1|scaffold_175552 (7738-7894)
               

               
               244-435, gnl|rheMac2|chr17 (86627226-86627358)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               244-435, gnl|bosTau2|chr12 (45139589-45139780)
               

               
               244-435, gnl|canFam2|chr22 (58465501-58465608)
               

               
               244-435, gnl|hg17|chr13 (105885997-105886128)
               

               
               244-435, gnl|Hg17|chr13 (105885996-105886176)
               

               
               244-435, gnl|oryCun1|scaffold_175552 (7738-7894)
               

               
               244-435, gnl|rheMac2|chr17 (86627226-86627358)

	244-435, gnl\|bosTau2\|chr12 (45139589-45139780)
	244-435, gnl\|canFam2\|chr22 (58465501-58465608)
	244-435, gnl\|hg17\|chr13 (105885997-105886128)
	244-435, gnl\|Hg17\|chr13 (105885996-105886176)
	244-435, gnl\|oryCun1\|scaffold_175552 (7738-7894)
	244-435, gnl\|rheMac2\|chr17 (86627226-86627358)